One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/oligos_7nt_mkv4_m3/peak-motifs_oligos_7nt_mkv4_m3.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/oligos_7nt_mkv4_m3/peak-motifs_oligos_7nt_mkv4_m3_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m3_shift5 ; 78 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
oligos_7nt_mkv4_m3_shift5 (oligos_7nt_mkv4_m3)     
; oligos_7nt_mkv4_m3; m=0 (reference); ncol1=12; shift=5; ncol=17; -----wtATGCwAATgw
; Alignment reference
a	0	0	0	0	0	298	176	686	10	10	39	216	634	705	45	177	210
c	0	0	0	0	0	79	154	15	7	8	630	18	44	10	34	120	141
g	0	0	0	0	0	120	131	14	16	688	23	50	39	5	35	258	171
t	0	0	0	0	0	235	271	17	699	26	40	448	15	12	618	177	210
MA0787.1_shift5 (POU3F2) 
; oligos_7nt_mkv4_m3 versus MA0787.1 (POU3F2); m=1/77; ncol2=12; w=12; offset=0; strand=D; shift=5; score=0.934706; -----wTATGCwAATka
; cor=; Ncor=
a	0	0	0	0	0	591.0	163.0	1292.0	28.0	19.0	68.0	688.0	1292.0	1292.0	63.0	137.0	1292.0
c	0	0	0	0	0	61.0	65.0	16.0	30.0	9.0	1292.0	4.0	16.0	6.0	19.0	165.0	262.0
g	0	0	0	0	0	171.0	40.0	25.0	12.0	1292.0	153.0	1.0	32.0	0.0	28.0	452.0	261.0
t	0	0	0	0	0	700.0	1292.0	0.0	1292.0	60.0	372.0	604.0	45.0	13.0	1292.0	840.0	562.0
MA0786.1_shift5 (POU3F1) 
; oligos_7nt_mkv4_m3 versus MA0786.1 (POU3F1); m=2/77; ncol2=12; w=12; offset=0; strand=D; shift=5; score=0.93311; -----wTATGywAATkw
; cor=; Ncor=
a	0	0	0	0	0	1034.0	505.0	2471.0	44.0	37.0	170.0	1423.0	2471.0	2471.0	259.0	382.0	1510.0
c	0	0	0	0	0	126.0	186.0	7.0	53.0	13.0	2471.0	1.0	103.0	20.0	95.0	302.0	478.0
g	0	0	0	0	0	322.0	128.0	26.0	21.0	2471.0	413.0	21.0	130.0	25.0	128.0	620.0	452.0
t	0	0	0	0	0	1437.0	2471.0	21.0	2471.0	232.0	1119.0	1048.0	284.0	63.0	2471.0	1167.0	961.0
MA0788.1_shift4 (POU3F3) 
; oligos_7nt_mkv4_m3 versus MA0788.1 (POU3F3); m=3/77; ncol2=13; w=12; offset=-1; strand=D; shift=4; score=0.854467; ----wwTATGCwAATtw
; cor=; Ncor=
a	0	0	0	0	576.0	440.0	129.0	1078.0	25.0	22.0	28.0	506.0	1078.0	1078.0	53.0	240.0	536.0
c	0	0	0	0	75.0	41.0	57.0	11.0	33.0	10.0	1078.0	4.0	11.0	6.0	20.0	141.0	85.0
g	0	0	0	0	137.0	131.0	64.0	12.0	49.0	1078.0	118.0	1.0	77.0	15.0	12.0	237.0	115.0
t	0	0	0	0	290.0	637.0	1078.0	30.0	1078.0	86.0	343.0	572.0	79.0	14.0	1078.0	1078.0	542.0
MA0507.1_rc_shift5 (POU2F2_rc) 
; oligos_7nt_mkv4_m3 versus MA0507.1_rc (POU2F2_rc); m=4/77; ncol2=13; w=12; offset=0; strand=R; shift=5; score=0.835311; -----wyATGCAAATkm
; cor=; Ncor=
a	0	0	0	0	0	1225.0	476.0	2285.0	0.0	16.0	132.0	2287.0	2029.0	2287.0	251.0	442.0	898.0
c	0	0	0	0	0	107.0	613.0	0.0	0.0	0.0	1997.0	0.0	0.0	0.0	1.0	415.0	593.0
g	0	0	0	0	0	361.0	39.0	2.0	30.0	2271.0	0.0	0.0	2.0	0.0	19.0	825.0	266.0
t	0	0	0	0	0	594.0	1159.0	0.0	2257.0	0.0	158.0	0.0	256.0	0.0	2016.0	605.0	530.0
MA0627.2_shift4 (POU2F3) 
; oligos_7nt_mkv4_m3 versus MA0627.2 (POU2F3); m=5/77; ncol2=13; w=12; offset=-1; strand=D; shift=4; score=0.829856; ----watATGCAAATww
; cor=; Ncor=
a	0	0	0	0	17399.0	26660.0	8522.0	54550.0	1090.0	980.0	946.0	54915.0	51382.0	55302.0	5115.0	16288.0	18907.0
c	0	0	0	0	11383.0	6824.0	6885.0	194.0	322.0	251.0	50288.0	80.0	567.0	164.0	3478.0	10595.0	11936.0
g	0	0	0	0	10722.0	8770.0	3029.0	354.0	1251.0	51971.0	1079.0	138.0	804.0	233.0	4098.0	13237.0	7941.0
t	0	0	0	0	16525.0	13775.0	37593.0	931.0	53366.0	2827.0	3716.0	896.0	3276.0	330.0	43338.0	15909.0	17245.0
MA1115.1_shift5 (POU5F1) 
; oligos_7nt_mkv4_m3 versus MA1115.1 (POU5F1); m=6/77; ncol2=11; w=11; offset=0; strand=D; shift=5; score=0.824772; -----wwATGCAAAtd-
; cor=; Ncor=
a	0	0	0	0	0	4982.0	3603.0	12693.0	83.0	717.0	533.0	11756.0	10560.0	12280.0	2556.0	3476.0	0
c	0	0	0	0	0	1290.0	2785.0	122.0	130.0	192.0	10310.0	132.0	690.0	270.0	2104.0	2450.0	0
g	0	0	0	0	0	1996.0	1908.0	229.0	67.0	11571.0	548.0	118.0	1026.0	257.0	2071.0	3551.0	0
t	0	0	0	0	0	4846.0	4818.0	70.0	12834.0	634.0	1723.0	1108.0	838.0	307.0	6383.0	3637.0	0
MA0785.1_shift4 (POU2F1) 
; oligos_7nt_mkv4_m3 versus MA0785.1 (POU2F1); m=7/77; ncol2=12; w=11; offset=-1; strand=D; shift=4; score=0.789961; ----awTATGcwAATt-
; cor=; Ncor=
a	0	0	0	0	5076.0	5351.0	756.0	10582.0	153.0	186.0	300.0	6932.0	10582.0	10582.0	1422.0	1976.0	0
c	0	0	0	0	1938.0	1046.0	1347.0	12.0	501.0	82.0	10582.0	33.0	108.0	37.0	457.0	1840.0	0
g	0	0	0	0	1494.0	2142.0	474.0	29.0	213.0	10582.0	1351.0	46.0	879.0	51.0	755.0	2504.0	0
t	0	0	0	0	2075.0	5231.0	10582.0	43.0	10582.0	1326.0	3375.0	3651.0	787.0	158.0	10582.0	4262.0	0
MA0784.1_shift4 (POU1F1) 
; oligos_7nt_mkv4_m3 versus MA0784.1 (POU1F1); m=8/77; ncol2=14; w=12; offset=-1; strand=D; shift=4; score=0.784479; ----awTATGCwAATkA
; cor=; Ncor=
a	0	0	0	0	1211.0	1128.0	276.0	2128.0	45.0	28.0	98.0	1267.0	2128.0	2128.0	76.0	222.0	2128.0
c	0	0	0	0	247.0	123.0	83.0	14.0	74.0	11.0	2128.0	12.0	11.0	10.0	37.0	241.0	174.0
g	0	0	0	0	273.0	187.0	108.0	32.0	26.0	2128.0	164.0	7.0	82.0	0.0	40.0	840.0	194.0
t	0	0	0	0	397.0	1000.0	2128.0	19.0	2128.0	176.0	536.0	861.0	85.0	3.0	2128.0	1287.0	273.0
MA0789.1_shift6 (POU3F4) 
; oligos_7nt_mkv4_m3 versus MA0789.1 (POU3F4); m=9/77; ncol2=9; w=9; offset=1; strand=D; shift=6; score=0.71138; ------TATGCwAAT--
; cor=; Ncor=
a	0	0	0	0	0	0	941.0	11117.0	59.0	53.0	136.0	6447.0	11117.0	11117.0	705.0	0	0
c	0	0	0	0	0	0	349.0	23.0	59.0	19.0	11117.0	10.0	332.0	47.0	247.0	0	0
g	0	0	0	0	0	0	136.0	68.0	24.0	11117.0	602.0	56.0	315.0	88.0	292.0	0	0
t	0	0	0	0	0	0	11117.0	26.0	11117.0	245.0	2565.0	4670.0	885.0	168.0	11117.0	0	0
MA0792.1_shift6 (POU5F1B) 
; oligos_7nt_mkv4_m3 versus MA0792.1 (POU5F1B); m=10/77; ncol2=9; w=9; offset=1; strand=D; shift=6; score=0.704504; ------TATGywAAT--
; cor=; Ncor=
a	0	0	0	0	0	0	1326.0	9519.0	171.0	322.0	398.0	6299.0	9519.0	9519.0	1559.0	0	0
c	0	0	0	0	0	0	1778.0	21.0	364.0	94.0	9519.0	51.0	144.0	65.0	537.0	0	0
g	0	0	0	0	0	0	808.0	67.0	206.0	9519.0	1293.0	65.0	856.0	97.0	750.0	0	0
t	0	0	0	0	0	0	9519.0	84.0	9519.0	1790.0	3828.0	3220.0	896.0	203.0	9519.0	0	0
MA0142.1_shift0 (Pou5f1::Sox2) 
; oligos_7nt_mkv4_m3 versus MA0142.1 (Pou5f1::Sox2); m=11/77; ncol2=15; w=10; offset=-5; strand=D; shift=0; score=0.534407; ywTTswyATGCAaAt--
; cor=; Ncor=
a	63.0	579.0	11.0	47.0	118.0	415.0	206.0	1235.0	17.0	10.0	14.0	1050.0	887.0	1200.0	198.0	0	0
c	846.0	58.0	50.0	12.0	363.0	18.0	365.0	30.0	5.0	16.0	1029.0	16.0	68.0	33.0	119.0	0	0
g	66.0	28.0	36.0	79.0	825.0	29.0	186.0	24.0	15.0	1239.0	129.0	30.0	315.0	75.0	207.0	0	0
t	389.0	701.0	1270.0	1231.0	63.0	907.0	612.0	80.0	1332.0	104.0	196.0	269.0	92.0	53.0	837.0	0	0
MA0912.2_shift10 (HOXD3) 
; oligos_7nt_mkv4_m3 versus MA0912.2 (HOXD3); m=12/77; ncol2=8; w=7; offset=5; strand=D; shift=10; score=0.459859; ----------CTAATTA
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	276.0	0.0	14562.0	14562.0	0.0	0.0	14562.0
c	0	0	0	0	0	0	0	0	0	0	11615.0	94.0	742.0	0.0	0.0	0.0	0.0
g	0	0	0	0	0	0	0	0	0	0	827.0	0.0	0.0	0.0	0.0	4453.0	2198.0
t	0	0	0	0	0	0	0	0	0	0	2947.0	14562.0	0.0	0.0	14562.0	14562.0	0.0
MA0893.2_rc_shift10 (GSX2_rc) 
; oligos_7nt_mkv4_m3 versus MA0893.2_rc (GSX2_rc); m=13/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.459358; ----------yTAATkr
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	918.0	20.0	4998.0	4998.0	0.0	29.0	4998.0
c	0	0	0	0	0	0	0	0	0	0	2840.0	1005.0	77.0	0.0	708.0	95.0	400.0
g	0	0	0	0	0	0	0	0	0	0	659.0	0.0	0.0	121.0	0.0	2223.0	2611.0
t	0	0	0	0	0	0	0	0	0	0	2158.0	4998.0	0.0	0.0	4998.0	2775.0	503.0
MA0132.2_rc_shift10 (PDX1_rc) 
; oligos_7nt_mkv4_m3 versus MA0132.2_rc (PDX1_rc); m=14/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.451209; ----------yTAATkr
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	852.0	0.0	7130.0	7130.0	0.0	78.0	4661.0
c	0	0	0	0	0	0	0	0	0	0	2881.0	0.0	0.0	0.0	0.0	185.0	0.0
g	0	0	0	0	0	0	0	0	0	0	1216.0	0.0	0.0	0.0	45.0	2291.0	2469.0
t	0	0	0	0	0	0	0	0	0	0	2181.0	7130.0	0.0	0.0	7130.0	4839.0	292.0
MA0887.1_rc_shift9 (EVX1_rc) 
; oligos_7nt_mkv4_m3 versus MA0887.1_rc (EVX1_rc); m=15/77; ncol2=10; w=8; offset=4; strand=R; shift=9; score=0.45048; ---------gsTAATta
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	1186.0	1743.0	172.0	7894.0	7894.0	0.0	358.0	7894.0
c	0	0	0	0	0	0	0	0	0	1958.0	2720.0	725.0	171.0	267.0	236.0	1885.0	269.0
g	0	0	0	0	0	0	0	0	0	3318.0	2098.0	14.0	463.0	67.0	29.0	1752.0	2343.0
t	0	0	0	0	0	0	0	0	0	1432.0	1333.0	7894.0	232.0	0.0	7894.0	3899.0	1196.0
MA0888.1_rc_shift9 (EVX2_rc) 
; oligos_7nt_mkv4_m3 versus MA0888.1_rc (EVX2_rc); m=16/77; ncol2=10; w=8; offset=4; strand=R; shift=9; score=0.449117; ---------gcTAATtA
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	3930.0	3682.0	446.0	20419.0	20419.0	0.0	752.0	20419.0
c	0	0	0	0	0	0	0	0	0	4997.0	7789.0	1559.0	445.0	702.0	881.0	4541.0	969.0
g	0	0	0	0	0	0	0	0	0	7715.0	4858.0	0.0	863.0	166.0	156.0	5018.0	5669.0
t	0	0	0	0	0	0	0	0	0	3778.0	4090.0	20419.0	303.0	5.0	20419.0	10108.0	2541.0
MA0875.1_rc_shift10 (BARX1_rc) 
; oligos_7nt_mkv4_m3 versus MA0875.1_rc (BARX1_rc); m=17/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.447639; ----------yTAATkg
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	1077.0	0.0	6805.0	6805.0	0.0	87.0	1667.0
c	0	0	0	0	0	0	0	0	0	0	2420.0	0.0	0.0	0.0	192.0	1386.0	246.0
g	0	0	0	0	0	0	0	0	0	0	1391.0	0.0	0.0	0.0	207.0	1992.0	5138.0
t	0	0	0	0	0	0	0	0	0	0	1917.0	6805.0	0.0	0.0	6805.0	3339.0	590.0
MA0068.2_shift10 (PAX4) 
; oligos_7nt_mkv4_m3 versus MA0068.2 (PAX4); m=18/77; ncol2=8; w=7; offset=5; strand=D; shift=10; score=0.446301; ----------ctAATTA
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	37.0	58.0	333.0	333.0	0.0	18.0	333.0
c	0	0	0	0	0	0	0	0	0	0	333.0	30.0	2.0	0.0	0.0	11.0	89.0
g	0	0	0	0	0	0	0	0	0	0	47.0	120.0	0.0	0.0	5.0	10.0	11.0
t	0	0	0	0	0	0	0	0	0	0	105.0	333.0	3.0	0.0	333.0	333.0	12.0
MA0725.1_shift10 (VSX1) 
; oligos_7nt_mkv4_m3 versus MA0725.1 (VSX1); m=19/77; ncol2=8; w=7; offset=5; strand=D; shift=10; score=0.444657; ----------yTAATTA
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	756.0	1836.0	13572.0	13572.0	172.0	898.0	13572.0
c	0	0	0	0	0	0	0	0	0	0	8453.0	3131.0	626.0	154.0	199.0	761.0	516.0
g	0	0	0	0	0	0	0	0	0	0	561.0	572.0	553.0	172.0	103.0	984.0	3337.0
t	0	0	0	0	0	0	0	0	0	0	5119.0	13572.0	554.0	90.0	13572.0	13572.0	1372.0
MA1499.1_rc_shift10 (HOXB4_rc) 
; oligos_7nt_mkv4_m3 versus MA1499.1_rc (HOXB4_rc); m=20/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.443783; ----------yTAATkA
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	1388.0	0.0	9080.0	9080.0	0.0	0.0	9080.0
c	0	0	0	0	0	0	0	0	0	0	4683.0	55.0	271.0	0.0	265.0	0.0	0.0
g	0	0	0	0	0	0	0	0	0	0	1409.0	0.0	0.0	0.0	0.0	5459.0	2103.0
t	0	0	0	0	0	0	0	0	0	0	4397.0	9080.0	0.0	0.0	9080.0	3621.0	0.0
MA0723.1_shift10 (VAX2) 
; oligos_7nt_mkv4_m3 versus MA0723.1 (VAX2); m=21/77; ncol2=8; w=7; offset=5; strand=D; shift=10; score=0.44374; ----------yTAATkA
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	921.0	1410.0	14297.0	14297.0	576.0	1341.0	14297.0
c	0	0	0	0	0	0	0	0	0	0	7816.0	2823.0	2781.0	213.0	161.0	987.0	179.0
g	0	0	0	0	0	0	0	0	0	0	1384.0	221.0	414.0	94.0	564.0	5673.0	3818.0
t	0	0	0	0	0	0	0	0	0	0	6482.0	14297.0	565.0	218.0	14297.0	14297.0	562.0
MA0903.1_rc_shift9 (HOXB3_rc) 
; oligos_7nt_mkv4_m3 versus MA0903.1_rc (HOXB3_rc); m=22/77; ncol2=10; w=8; offset=4; strand=R; shift=9; score=0.443174; ---------gyTAATkr
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	2724.0	1506.0	574.0	12899.0	12899.0	242.0	697.0	7920.0
c	0	0	0	0	0	0	0	0	0	2981.0	4732.0	0.0	0.0	0.0	640.0	838.0	604.0
g	0	0	0	0	0	0	0	0	0	3995.0	2119.0	119.0	839.0	150.0	545.0	5106.0	4979.0
t	0	0	0	0	0	0	0	0	0	3199.0	4542.0	12899.0	441.0	0.0	12899.0	7793.0	1744.0
MA1507.1_rc_shift10 (HOXD4_rc) 
; oligos_7nt_mkv4_m3 versus MA1507.1_rc (HOXD4_rc); m=23/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.442394; ----------yTAATkR
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	631.0	0.0	3405.0	3405.0	0.0	0.0	3405.0
c	0	0	0	0	0	0	0	0	0	0	1147.0	194.0	0.0	0.0	176.0	0.0	0.0
g	0	0	0	0	0	0	0	0	0	0	525.0	0.0	0.0	0.0	0.0	1862.0	1184.0
t	0	0	0	0	0	0	0	0	0	0	1102.0	3405.0	0.0	0.0	3405.0	1542.0	0.0
MA0726.1_shift10 (VSX2) 
; oligos_7nt_mkv4_m3 versus MA0726.1 (VSX2); m=24/77; ncol2=8; w=7; offset=5; strand=D; shift=10; score=0.442203; ----------yTAATTA
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	427.0	1080.0	13809.0	13809.0	118.0	626.0	13809.0
c	0	0	0	0	0	0	0	0	0	0	9554.0	2725.0	397.0	124.0	186.0	567.0	321.0
g	0	0	0	0	0	0	0	0	0	0	445.0	363.0	343.0	123.0	92.0	447.0	2109.0
t	0	0	0	0	0	0	0	0	0	0	4255.0	13809.0	402.0	63.0	13809.0	13809.0	1014.0
MA0722.1_shift10 (VAX1) 
; oligos_7nt_mkv4_m3 versus MA0722.1 (VAX1); m=25/77; ncol2=8; w=7; offset=5; strand=D; shift=10; score=0.442165; ----------yTAATtA
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	447.0	679.0	5253.0	5253.0	297.0	508.0	5253.0
c	0	0	0	0	0	0	0	0	0	0	2775.0	995.0	863.0	153.0	86.0	321.0	87.0
g	0	0	0	0	0	0	0	0	0	0	455.0	101.0	189.0	46.0	213.0	1951.0	1332.0
t	0	0	0	0	0	0	0	0	0	0	2479.0	5253.0	302.0	133.0	5253.0	5253.0	398.0
MA0902.2_rc_shift10 (HOXB2_rc) 
; oligos_7nt_mkv4_m3 versus MA0902.2_rc (HOXB2_rc); m=26/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.441492; ----------sTAATkr
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	589.0	0.0	6827.0	6827.0	0.0	0.0	3993.0
c	0	0	0	0	0	0	0	0	0	0	2933.0	0.0	1876.0	0.0	0.0	199.0	0.0
g	0	0	0	0	0	0	0	0	0	0	2031.0	0.0	0.0	0.0	0.0	3276.0	2834.0
t	0	0	0	0	0	0	0	0	0	0	1273.0	6827.0	0.0	0.0	6827.0	6827.0	51.0
MA0710.1_rc_shift9 (NOTO_rc) 
; oligos_7nt_mkv4_m3 versus MA0710.1_rc (NOTO_rc); m=27/77; ncol2=10; w=8; offset=4; strand=R; shift=9; score=0.440906; ---------syTAATKa
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	4124.0	2832.0	1904.0	21405.0	21405.0	0.0	139.0	21405.0
c	0	0	0	0	0	0	0	0	0	5493.0	7679.0	2057.0	422.0	0.0	0.0	0.0	573.0
g	0	0	0	0	0	0	0	0	0	7711.0	3856.0	0.0	62.0	0.0	0.0	6310.0	4001.0
t	0	0	0	0	0	0	0	0	0	4078.0	7038.0	21405.0	374.0	0.0	21405.0	15096.0	7097.0
MA1504.1_rc_shift10 (HOXC4_rc) 
; oligos_7nt_mkv4_m3 versus MA1504.1_rc (HOXC4_rc); m=28/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.439926; ----------yTAATkR
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	1592.0	0.0	8759.0	8759.0	0.0	0.0	8759.0
c	0	0	0	0	0	0	0	0	0	0	2713.0	825.0	0.0	0.0	583.0	0.0	0.0
g	0	0	0	0	0	0	0	0	0	0	1679.0	0.0	0.0	0.0	0.0	5152.0	3111.0
t	0	0	0	0	0	0	0	0	0	0	2776.0	8759.0	0.0	0.0	8759.0	3607.0	188.0
MA0876.1_rc_shift10 (BSX_rc) 
; oligos_7nt_mkv4_m3 versus MA0876.1_rc (BSX_rc); m=29/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.436911; ----------bTAATkr
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	1276.0	0.0	8832.0	8832.0	66.0	116.0	3247.0
c	0	0	0	0	0	0	0	0	0	0	2417.0	0.0	0.0	0.0	1078.0	2197.0	103.0
g	0	0	0	0	0	0	0	0	0	0	2369.0	0.0	0.0	0.0	194.0	2483.0	5585.0
t	0	0	0	0	0	0	0	0	0	0	2770.0	8832.0	96.0	0.0	8832.0	4036.0	688.0
MA1496.1_rc_shift10 (HOXA4_rc) 
; oligos_7nt_mkv4_m3 versus MA1496.1_rc (HOXA4_rc); m=30/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.434358; ----------yTAATkR
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	385.0	0.0	2454.0	2454.0	0.0	0.0	2454.0
c	0	0	0	0	0	0	0	0	0	0	840.0	260.0	171.0	39.0	684.0	176.0	0.0
g	0	0	0	0	0	0	0	0	0	0	593.0	146.0	173.0	0.0	0.0	1561.0	967.0
t	0	0	0	0	0	0	0	0	0	0	636.0	2454.0	0.0	0.0	2454.0	893.0	0.0
MA0630.1_shift10 (SHOX) 
; oligos_7nt_mkv4_m3 versus MA0630.1 (SHOX); m=31/77; ncol2=8; w=7; offset=5; strand=D; shift=10; score=0.43186; ----------yTAATTr
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	179.0	74.0	852.0	991.0	15.0	98.0	416.0
c	0	0	0	0	0	0	0	0	0	0	301.0	30.0	48.0	2.0	15.0	50.0	48.0
g	0	0	0	0	0	0	0	0	0	0	162.0	9.0	55.0	5.0	27.0	84.0	424.0
t	0	0	0	0	0	0	0	0	0	0	357.0	886.0	45.0	2.0	943.0	768.0	111.0
MA0612.2_rc_shift10 (EMX1_rc) 
; oligos_7nt_mkv4_m3 versus MA0612.2_rc (EMX1_rc); m=32/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.42935; ----------sTAATTA
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	1062.0	0.0	9544.0	9544.0	0.0	0.0	7281.0
c	0	0	0	0	0	0	0	0	0	0	4516.0	0.0	933.0	0.0	0.0	0.0	0.0
g	0	0	0	0	0	0	0	0	0	0	2633.0	0.0	0.0	0.0	0.0	1235.0	2263.0
t	0	0	0	0	0	0	0	0	0	0	1333.0	9544.0	0.0	0.0	9544.0	9544.0	19.0
MA1577.1_rc_shift10 (TLX2_rc) 
; oligos_7nt_mkv4_m3 versus MA1577.1_rc (TLX2_rc); m=33/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.428749; ----------yTAATTr
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	852.0	0.0	7799.0	7799.0	0.0	0.0	8156.0
c	0	0	0	0	0	0	0	0	0	0	3439.0	0.0	0.0	0.0	0.0	80.0	1112.0
g	0	0	0	0	0	0	0	0	0	0	1323.0	0.0	0.0	0.0	0.0	0.0	7799.0
t	0	0	0	0	0	0	0	0	0	0	2184.0	7799.0	0.0	0.0	7799.0	7799.0	1435.0
MA0900.2_rc_shift10 (HOXA2_rc) 
; oligos_7nt_mkv4_m3 versus MA0900.2_rc (HOXA2_rc); m=34/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.42761; ----------sTAATKA
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	7731.0	0.0	56949.0	56949.0	0.0	0.0	56949.0
c	0	0	0	0	0	0	0	0	0	0	22246.0	2052.0	0.0	0.0	0.0	290.0	0.0
g	0	0	0	0	0	0	0	0	0	0	16330.0	0.0	0.0	0.0	0.0	17275.0	3636.0
t	0	0	0	0	0	0	0	0	0	0	10641.0	56949.0	0.0	0.0	56949.0	39674.0	0.0
MA0889.1_rc_shift9 (GBX1_rc) 
; oligos_7nt_mkv4_m3 versus MA0889.1_rc (GBX1_rc); m=35/77; ncol2=10; w=8; offset=4; strand=R; shift=9; score=0.427561; ---------gcTAATTr
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	6655.0	3039.0	321.0	27339.0	27339.0	23.0	157.0	13796.0
c	0	0	0	0	0	0	0	0	0	5441.0	12203.0	8.0	246.0	1.0	29.0	758.0	15.0
g	0	0	0	0	0	0	0	0	0	11717.0	6377.0	50.0	438.0	128.0	172.0	589.0	13543.0
t	0	0	0	0	0	0	0	0	0	3526.0	5720.0	27339.0	312.0	45.0	27339.0	27339.0	243.0
MA0717.1_rc_shift10 (RAX2_rc) 
; oligos_7nt_mkv4_m3 versus MA0717.1_rc (RAX2_rc); m=36/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.426071; ----------yTAATTr
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	5601.0	4258.0	38860.0	38860.0	1030.0	2421.0	19215.0
c	0	0	0	0	0	0	0	0	0	0	12362.0	360.0	2513.0	125.0	757.0	4490.0	1688.0
g	0	0	0	0	0	0	0	0	0	0	7487.0	2644.0	4232.0	738.0	1523.0	3060.0	19645.0
t	0	0	0	0	0	0	0	0	0	0	13411.0	38860.0	2167.0	270.0	38860.0	38860.0	3558.0
MA0705.1_shift10 (Lhx8) 
; oligos_7nt_mkv4_m3 versus MA0705.1 (Lhx8); m=37/77; ncol2=8; w=7; offset=5; strand=D; shift=10; score=0.425818; ----------cYAATYR
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	472.0	0.0	5092.0	5092.0	0.0	0.0	5092.0
c	0	0	0	0	0	0	0	0	0	0	2588.0	1996.0	160.0	0.0	0.0	2083.0	0.0
g	0	0	0	0	0	0	0	0	0	0	925.0	0.0	1670.0	0.0	0.0	88.0	1929.0
t	0	0	0	0	0	0	0	0	0	0	1108.0	5092.0	0.0	0.0	5092.0	5092.0	0.0
MA0158.2_rc_shift10 (HOXA5_rc) 
; oligos_7nt_mkv4_m3 versus MA0158.2_rc (HOXA5_rc); m=38/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.424914; ----------sTAATkr
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	54.0	0.0	3130.0	3130.0	0.0	0.0	2078.0
c	0	0	0	0	0	0	0	0	0	0	1133.0	0.0	885.0	0.0	0.0	81.0	0.0
g	0	0	0	0	0	0	0	0	0	0	1463.0	0.0	0.0	0.0	0.0	1632.0	1052.0
t	0	0	0	0	0	0	0	0	0	0	480.0	3130.0	0.0	0.0	3130.0	3130.0	0.0
MA1500.1_shift10 (HOXB6) 
; oligos_7nt_mkv4_m3 versus MA1500.1 (HOXB6); m=39/77; ncol2=8; w=7; offset=5; strand=D; shift=10; score=0.423622; ----------tTAATkr
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	1357.0	0.0	6192.0	6192.0	0.0	403.0	3128.0
c	0	0	0	0	0	0	0	0	0	0	2468.0	710.0	647.0	0.0	436.0	926.0	0.0
g	0	0	0	0	0	0	0	0	0	0	2395.0	0.0	0.0	0.0	727.0	4139.0	3064.0
t	0	0	0	0	0	0	0	0	0	0	3724.0	6192.0	564.0	0.0	6192.0	6192.0	0.0
MA0886.1_rc_shift9 (EMX2_rc) 
; oligos_7nt_mkv4_m3 versus MA0886.1_rc (EMX2_rc); m=40/77; ncol2=10; w=8; offset=4; strand=R; shift=9; score=0.423002; ---------scTAATTA
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	8043.0	3328.0	0.0	37262.0	37262.0	0.0	1236.0	29501.0
c	0	0	0	0	0	0	0	0	0	10195.0	17672.0	0.0	4025.0	0.0	0.0	678.0	0.0
g	0	0	0	0	0	0	0	0	0	13054.0	7124.0	0.0	0.0	0.0	0.0	4938.0	7761.0
t	0	0	0	0	0	0	0	0	0	5970.0	9139.0	37262.0	0.0	0.0	37262.0	37262.0	834.0
MA0642.1_rc_shift9 (EN2_rc) 
; oligos_7nt_mkv4_m3 versus MA0642.1_rc (EN2_rc); m=41/77; ncol2=10; w=8; offset=4; strand=R; shift=9; score=0.422693; ---------ssTAATTr
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	283.0	177.0	0.0	1648.0	1648.0	0.0	53.0	624.0
c	0	0	0	0	0	0	0	0	0	476.0	630.0	45.0	203.0	0.0	7.0	164.0	35.0
g	0	0	0	0	0	0	0	0	0	708.0	491.0	0.0	420.0	0.0	105.0	297.0	1024.0
t	0	0	0	0	0	0	0	0	0	181.0	350.0	1648.0	0.0	0.0	1648.0	1648.0	10.0
MA1501.1_rc_shift9 (HOXB7_rc) 
; oligos_7nt_mkv4_m3 versus MA1501.1_rc (HOXB7_rc); m=42/77; ncol2=10; w=8; offset=4; strand=R; shift=9; score=0.420897; ---------syTAATTr
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	92.0	71.0	0.0	828.0	828.0	0.0	0.0	828.0
c	0	0	0	0	0	0	0	0	0	250.0	268.0	151.0	0.0	31.0	0.0	0.0	51.0
g	0	0	0	0	0	0	0	0	0	354.0	165.0	0.0	3.0	0.0	29.0	222.0	359.0
t	0	0	0	0	0	0	0	0	0	132.0	324.0	828.0	79.0	0.0	828.0	828.0	0.0
MA1518.1_rc_shift10 (LHX1_rc) 
; oligos_7nt_mkv4_m3 versus MA1518.1_rc (LHX1_rc); m=43/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.420835; ----------sTaATtr
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	2986.0	2105.0	14954.0	14954.0	569.0	2084.0	5724.0
c	0	0	0	0	0	0	0	0	0	0	3908.0	617.0	3100.0	0.0	39.0	4035.0	572.0
g	0	0	0	0	0	0	0	0	0	0	5037.0	495.0	5413.0	0.0	270.0	4878.0	9230.0
t	0	0	0	0	0	0	0	0	0	0	3023.0	14954.0	1101.0	0.0	14954.0	14954.0	949.0
MA0721.1_rc_shift10 (UNCX_rc) 
; oligos_7nt_mkv4_m3 versus MA0721.1_rc (UNCX_rc); m=44/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.420672; ----------yTAATTr
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	4810.0	3885.0	36926.0	36926.0	890.0	2629.0	20126.0
c	0	0	0	0	0	0	0	0	0	0	10480.0	731.0	1782.0	117.0	420.0	4582.0	2086.0
g	0	0	0	0	0	0	0	0	0	0	7825.0	2211.0	3958.0	806.0	1302.0	2540.0	16800.0
t	0	0	0	0	0	0	0	0	0	0	13811.0	36926.0	3111.0	481.0	36926.0	36926.0	3975.0
MA1498.1_rc_shift10 (HOXA7_rc) 
; oligos_7nt_mkv4_m3 versus MA1498.1_rc (HOXA7_rc); m=45/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.420504; ----------gTAATkr
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	702.0	0.0	4227.0	4227.0	148.0	226.0	1908.0
c	0	0	0	0	0	0	0	0	0	0	977.0	0.0	815.0	0.0	25.0	417.0	9.0
g	0	0	0	0	0	0	0	0	0	0	1720.0	0.0	0.0	0.0	83.0	3335.0	2319.0
t	0	0	0	0	0	0	0	0	0	0	828.0	4227.0	159.0	0.0	4227.0	4227.0	0.0
MA0720.1_rc_shift10 (Shox2_rc) 
; oligos_7nt_mkv4_m3 versus MA0720.1_rc (Shox2_rc); m=46/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.420332; ----------yTAATTr
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	2278.0	895.0	18179.0	18179.0	79.0	766.0	9152.0
c	0	0	0	0	0	0	0	0	0	0	6337.0	36.0	870.0	0.0	3.0	426.0	228.0
g	0	0	0	0	0	0	0	0	0	0	3021.0	193.0	545.0	12.0	138.0	626.0	9027.0
t	0	0	0	0	0	0	0	0	0	0	6542.0	18179.0	597.0	29.0	18179.0	18179.0	979.0
MA0027.2_rc_shift10 (EN1_rc) 
; oligos_7nt_mkv4_m3 versus MA0027.2_rc (EN1_rc); m=47/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.419785; ----------cTAATTr
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	302.0	132.0	2891.0	2891.0	0.0	0.0	1562.0
c	0	0	0	0	0	0	0	0	0	0	1216.0	30.0	162.0	0.0	0.0	71.0	5.0
g	0	0	0	0	0	0	0	0	0	0	683.0	0.0	483.0	0.0	28.0	99.0	1328.0
t	0	0	0	0	0	0	0	0	0	0	689.0	2891.0	57.0	0.0	2891.0	2891.0	104.0
MA0701.2_shift10 (LHX9) 
; oligos_7nt_mkv4_m3 versus MA0701.2 (LHX9); m=48/77; ncol2=8; w=7; offset=5; strand=D; shift=10; score=0.417902; ----------CyAATTA
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	390.0	0.0	6075.0	6075.0	0.0	0.0	6075.0
c	0	0	0	0	0	0	0	0	0	0	6075.0	2093.0	505.0	0.0	0.0	0.0	0.0
g	0	0	0	0	0	0	0	0	0	0	1056.0	0.0	0.0	0.0	0.0	170.0	305.0
t	0	0	0	0	0	0	0	0	0	0	1219.0	3983.0	20.0	0.0	6075.0	6075.0	0.0
MA0704.1_rc_shift10 (Lhx4_rc) 
; oligos_7nt_mkv4_m3 versus MA0704.1_rc (Lhx4_rc); m=49/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.416748; ----------yTAATTA
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	275.0	135.0	2896.0	2896.0	155.0	255.0	2896.0
c	0	0	0	0	0	0	0	0	0	0	857.0	316.0	57.0	0.0	0.0	309.0	0.0
g	0	0	0	0	0	0	0	0	0	0	449.0	39.0	446.0	0.0	0.0	428.0	912.0
t	0	0	0	0	0	0	0	0	0	0	1314.0	2896.0	0.0	0.0	2896.0	2896.0	217.0
MA0644.1_rc_shift9 (ESX1_rc) 
; oligos_7nt_mkv4_m3 versus MA0644.1_rc (ESX1_rc); m=50/77; ncol2=10; w=8; offset=4; strand=R; shift=9; score=0.416308; ---------gyTAATTr
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	7223.0	5689.0	2501.0	35623.0	35623.0	1089.0	2400.0	17642.0
c	0	0	0	0	0	0	0	0	0	6231.0	10210.0	449.0	1274.0	4.0	867.0	3416.0	472.0
g	0	0	0	0	0	0	0	0	0	14583.0	7659.0	477.0	4545.0	995.0	2440.0	3018.0	17981.0
t	0	0	0	0	0	0	0	0	0	7586.0	12065.0	35623.0	3721.0	756.0	35623.0	35623.0	2884.0
MA1481.1_rc_shift10 (DRGX_rc) 
; oligos_7nt_mkv4_m3 versus MA1481.1_rc (DRGX_rc); m=51/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.416261; ----------sTAATTr
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	3105.0	144.0	14867.0	14867.0	0.0	0.0	8870.0
c	0	0	0	0	0	0	0	0	0	0	3995.0	962.0	209.0	0.0	0.0	2037.0	1111.0
g	0	0	0	0	0	0	0	0	0	0	4651.0	17.0	813.0	0.0	0.0	501.0	5997.0
t	0	0	0	0	0	0	0	0	0	0	3117.0	14867.0	0.0	0.0	14867.0	14867.0	1079.0
MA0879.1_rc_shift9 (Dlx1_rc) 
; oligos_7nt_mkv4_m3 versus MA0879.1_rc (Dlx1_rc); m=52/77; ncol2=10; w=8; offset=4; strand=R; shift=9; score=0.416228; ---------gmTAATTr
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	1648.0	2536.0	1910.0	8281.0	8281.0	535.0	347.0	5528.0
c	0	0	0	0	0	0	0	0	0	1893.0	2077.0	36.0	511.0	49.0	42.0	416.0	149.0
g	0	0	0	0	0	0	0	0	0	3126.0	1894.0	103.0	359.0	41.0	105.0	861.0	2753.0
t	0	0	0	0	0	0	0	0	0	1613.0	1774.0	8281.0	157.0	1002.0	8281.0	8281.0	2295.0
MA0724.1_rc_shift10 (VENTX_rc) 
; oligos_7nt_mkv4_m3 versus MA0724.1_rc (VENTX_rc); m=53/77; ncol2=9; w=7; offset=5; strand=R; shift=10; score=0.415319; ----------yTAATyG
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	2189.0	0.0	23923.0	23923.0	74.0	626.0	3964.0
c	0	0	0	0	0	0	0	0	0	0	15103.0	0.0	0.0	0.0	0.0	16128.0	0.0
g	0	0	0	0	0	0	0	0	0	0	706.0	0.0	0.0	0.0	203.0	5650.0	23923.0
t	0	0	0	0	0	0	0	0	0	0	8820.0	23923.0	0.0	0.0	23923.0	7795.0	562.0
MA0894.1_shift9 (HESX1) 
; oligos_7nt_mkv4_m3 versus MA0894.1 (HESX1); m=54/77; ncol2=10; w=8; offset=4; strand=D; shift=9; score=0.41497; ---------gyTAATTr
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	831.0	879.0	187.0	4072.0	4072.0	0.0	0.0	1892.0
c	0	0	0	0	0	0	0	0	0	753.0	1432.0	0.0	0.0	7.0	0.0	15.0	38.0
g	0	0	0	0	0	0	0	0	0	1743.0	447.0	34.0	53.0	9.0	15.0	0.0	2180.0
t	0	0	0	0	0	0	0	0	0	744.0	1313.0	4072.0	31.0	0.0	4072.0	4072.0	97.0
MA0075.3_shift10 (PRRX2) 
; oligos_7nt_mkv4_m3 versus MA0075.3 (PRRX2); m=55/77; ncol2=8; w=7; offset=5; strand=D; shift=10; score=0.414728; ----------cyAATTA
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	778.0	122.0	6720.0	6720.0	0.0	0.0	6720.0
c	0	0	0	0	0	0	0	0	0	0	6720.0	2008.0	29.0	0.0	0.0	0.0	1.0
g	0	0	0	0	0	0	0	0	0	0	1613.0	131.0	3.0	0.0	0.0	0.0	399.0
t	0	0	0	0	0	0	0	0	0	0	1933.0	4711.0	0.0	0.0	6720.0	6720.0	0.0
MA0699.1_rc_shift9 (LBX2_rc) 
; oligos_7nt_mkv4_m3 versus MA0699.1_rc (LBX2_rc); m=56/77; ncol2=10; w=8; offset=4; strand=R; shift=9; score=0.413764; ---------gyTAATTr
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	560.0	438.0	148.0	2996.0	2996.0	89.0	57.0	1362.0
c	0	0	0	0	0	0	0	0	0	737.0	1135.0	106.0	293.0	118.0	130.0	325.0	109.0
g	0	0	0	0	0	0	0	0	0	977.0	434.0	34.0	258.0	29.0	290.0	338.0	1634.0
t	0	0	0	0	0	0	0	0	0	722.0	990.0	2996.0	150.0	0.0	2996.0	2996.0	157.0
MA1502.1_rc_shift10 (HOXB8_rc) 
; oligos_7nt_mkv4_m3 versus MA1502.1_rc (HOXB8_rc); m=57/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.41363; ----------kTAATkr
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	766.0	0.0	4474.0	4474.0	0.0	0.0	1914.0
c	0	0	0	0	0	0	0	0	0	0	830.0	0.0	542.0	0.0	0.0	89.0	0.0
g	0	0	0	0	0	0	0	0	0	0	1704.0	0.0	0.0	0.0	0.0	3374.0	2560.0
t	0	0	0	0	0	0	0	0	0	0	1174.0	4474.0	284.0	0.0	4474.0	4474.0	0.0
MA0654.1_rc_shift10 (ISX_rc) 
; oligos_7nt_mkv4_m3 versus MA0654.1_rc (ISX_rc); m=58/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.413411; ----------yTAATTr
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	283.0	49.0	2065.0	2065.0	10.0	24.0	1061.0
c	0	0	0	0	0	0	0	0	0	0	704.0	0.0	24.0	0.0	0.0	5.0	0.0
g	0	0	0	0	0	0	0	0	0	0	307.0	0.0	0.0	0.0	16.0	48.0	1003.0
t	0	0	0	0	0	0	0	0	0	0	770.0	2065.0	0.0	0.0	2065.0	2065.0	10.0
MA1463.1_shift9 (ARGFX) 
; oligos_7nt_mkv4_m3 versus MA1463.1 (ARGFX); m=59/77; ncol2=10; w=8; offset=4; strand=D; shift=9; score=0.412547; ---------kcTAATTA
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	3893.0	2558.0	270.0	16589.0	16589.0	0.0	0.0	16589.0
c	0	0	0	0	0	0	0	0	0	1750.0	16589.0	1130.0	46.0	0.0	0.0	44.0	499.0
g	0	0	0	0	0	0	0	0	0	4467.0	1748.0	96.0	0.0	0.0	0.0	0.0	1492.0
t	0	0	0	0	0	0	0	0	0	6479.0	4423.0	16589.0	4.0	0.0	16589.0	16589.0	1048.0
MA0716.1_rc_shift10 (PRRX1_rc) 
; oligos_7nt_mkv4_m3 versus MA0716.1_rc (PRRX1_rc); m=60/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.411685; ----------yTAATTr
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	3765.0	1229.0	23897.0	23897.0	209.0	810.0	12775.0
c	0	0	0	0	0	0	0	0	0	0	6366.0	136.0	1004.0	0.0	202.0	1776.0	1121.0
g	0	0	0	0	0	0	0	0	0	0	4269.0	644.0	2302.0	3.0	503.0	1088.0	11122.0
t	0	0	0	0	0	0	0	0	0	0	9498.0	23897.0	1264.0	0.0	23897.0	23897.0	2373.0
MA1497.1_rc_shift9 (HOXA6_rc) 
; oligos_7nt_mkv4_m3 versus MA1497.1_rc (HOXA6_rc); m=61/77; ncol2=10; w=8; offset=4; strand=R; shift=9; score=0.411099; ---------stTAATkr
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	1489.0	1492.0	663.0	7201.0	7201.0	11.0	1482.0	4234.0
c	0	0	0	0	0	0	0	0	0	2020.0	1632.0	502.0	553.0	0.0	908.0	833.0	100.0
g	0	0	0	0	0	0	0	0	0	2457.0	1377.0	94.0	233.0	0.0	745.0	3768.0	2967.0
t	0	0	0	0	0	0	0	0	0	1234.0	2700.0	7201.0	1911.0	0.0	7201.0	7201.0	87.0
MA0890.1_rc_shift9 (GBX2_rc) 
; oligos_7nt_mkv4_m3 versus MA0890.1_rc (GBX2_rc); m=62/77; ncol2=10; w=8; offset=4; strand=R; shift=9; score=0.409782; ---------syTAATTr
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	5743.0	3991.0	650.0	27366.0	27366.0	25.0	227.0	11855.0
c	0	0	0	0	0	0	0	0	0	7075.0	10638.0	30.0	673.0	65.0	114.0	1113.0	106.0
g	0	0	0	0	0	0	0	0	0	9159.0	4502.0	73.0	570.0	61.0	250.0	570.0	15511.0
t	0	0	0	0	0	0	0	0	0	5389.0	8236.0	27366.0	318.0	0.0	27366.0	27366.0	699.0
MA0662.1_rc_shift9 (MIXL1_rc) 
; oligos_7nt_mkv4_m3 versus MA0662.1_rc (MIXL1_rc); m=63/77; ncol2=10; w=8; offset=4; strand=R; shift=9; score=0.409452; ---------kyTAATTr
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	4397.0	3931.0	2895.0	27042.0	27042.0	736.0	1038.0	15403.0
c	0	0	0	0	0	0	0	0	0	6129.0	8529.0	115.0	2031.0	181.0	556.0	3660.0	1245.0
g	0	0	0	0	0	0	0	0	0	8462.0	4894.0	1903.0	4270.0	510.0	662.0	1911.0	11639.0
t	0	0	0	0	0	0	0	0	0	8054.0	9688.0	27042.0	1385.0	0.0	27042.0	27042.0	2635.0
MA0666.1_rc_shift10 (MSX1_rc) 
; oligos_7nt_mkv4_m3 versus MA0666.1_rc (MSX1_rc); m=64/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.409357; ----------bTAATTr
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	460.0	91.0	3073.0	3073.0	0.0	16.0	956.0
c	0	0	0	0	0	0	0	0	0	0	945.0	105.0	251.0	31.0	0.0	139.0	33.0
g	0	0	0	0	0	0	0	0	0	0	814.0	118.0	205.0	0.0	107.0	332.0	2117.0
t	0	0	0	0	0	0	0	0	0	0	855.0	3073.0	63.0	0.0	3073.0	3073.0	82.0
MA0892.1_rc_shift9 (GSX1_rc) 
; oligos_7nt_mkv4_m3 versus MA0892.1_rc (GSX1_rc); m=65/77; ncol2=10; w=8; offset=4; strand=R; shift=9; score=0.409244; ---------dyTAATkr
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	315.0	173.0	103.0	1183.0	1183.0	50.0	177.0	733.0
c	0	0	0	0	0	0	0	0	0	214.0	313.0	9.0	0.0	3.0	123.0	60.0	48.0
g	0	0	0	0	0	0	0	0	0	305.0	249.0	0.0	106.0	79.0	106.0	402.0	450.0
t	0	0	0	0	0	0	0	0	0	350.0	448.0	1183.0	106.0	90.0	1183.0	781.0	124.0
MA0648.1_shift9 (GSC) 
; oligos_7nt_mkv4_m3 versus MA0648.1 (GSC); m=66/77; ncol2=10; w=8; offset=4; strand=D; shift=9; score=0.409233; ---------syTAATCC
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	1249.0	955.0	0.0	6081.0	6081.0	0.0	416.0	315.0
c	0	0	0	0	0	0	0	0	0	1912.0	2885.0	54.0	71.0	0.0	25.0	6081.0	6081.0
g	0	0	0	0	0	0	0	0	0	2039.0	553.0	0.0	176.0	0.0	144.0	452.0	828.0
t	0	0	0	0	0	0	0	0	0	882.0	1688.0	6081.0	89.0	0.0	6081.0	787.0	1099.0
MA0904.2_shift10 (HOXB5) 
; oligos_7nt_mkv4_m3 versus MA0904.2 (HOXB5); m=67/77; ncol2=8; w=7; offset=5; strand=D; shift=10; score=0.408684; ----------sTMATKA
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	381.0	0.0	3067.0	3067.0	0.0	6.0	3067.0
c	0	0	0	0	0	0	0	0	0	0	1120.0	537.0	1031.0	0.0	0.0	26.0	0.0
g	0	0	0	0	0	0	0	0	0	0	1273.0	0.0	0.0	0.0	0.0	1061.0	564.0
t	0	0	0	0	0	0	0	0	0	0	294.0	3067.0	0.0	0.0	3067.0	3067.0	0.0
MA0634.1_rc_shift9 (ALX3_rc) 
; oligos_7nt_mkv4_m3 versus MA0634.1_rc (ALX3_rc); m=68/77; ncol2=10; w=8; offset=4; strand=R; shift=9; score=0.407921; ---------kyTAATTr
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	1168.0	1403.0	977.0	7877.0	7877.0	231.0	629.0	4510.0
c	0	0	0	0	0	0	0	0	0	1503.0	2205.0	87.0	239.0	8.0	141.0	885.0	345.0
g	0	0	0	0	0	0	0	0	0	2446.0	1671.0	449.0	729.0	72.0	317.0	506.0	3367.0
t	0	0	0	0	0	0	0	0	0	2759.0	2597.0	7877.0	697.0	76.0	7877.0	7877.0	794.0
MA0658.1_shift9 (LHX6) 
; oligos_7nt_mkv4_m3 versus MA0658.1 (LHX6); m=69/77; ncol2=10; w=8; offset=4; strand=D; shift=9; score=0.407362; ---------rcTAATTA
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	1857.0	529.0	0.0	4438.0	4438.0	0.0	0.0	4438.0
c	0	0	0	0	0	0	0	0	0	769.0	3015.0	253.0	90.0	14.0	98.0	766.0	0.0
g	0	0	0	0	0	0	0	0	0	1548.0	791.0	28.0	487.0	0.0	15.0	108.0	243.0
t	0	0	0	0	0	0	0	0	0	264.0	1422.0	4438.0	0.0	0.0	4438.0	4438.0	2.0
MA0709.1_rc_shift10 (Msx3_rc) 
; oligos_7nt_mkv4_m3 versus MA0709.1_rc (Msx3_rc); m=70/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.406306; ----------yTAATTr
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	1360.0	213.0	8380.0	8380.0	5.0	94.0	2582.0
c	0	0	0	0	0	0	0	0	0	0	2595.0	88.0	105.0	0.0	38.0	237.0	29.0
g	0	0	0	0	0	0	0	0	0	0	1737.0	59.0	215.0	0.0	89.0	160.0	5798.0
t	0	0	0	0	0	0	0	0	0	0	2689.0	8380.0	121.0	0.0	8380.0	8380.0	312.0
MA0880.1_rc_shift10 (Dlx3_rc) 
; oligos_7nt_mkv4_m3 versus MA0880.1_rc (Dlx3_rc); m=71/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.40577; ----------kTAATTr
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	1809.0	691.0	7323.0	7323.0	299.0	643.0	3190.0
c	0	0	0	0	0	0	0	0	0	0	1356.0	101.0	452.0	60.0	62.0	587.0	164.0
g	0	0	0	0	0	0	0	0	0	0	2131.0	202.0	535.0	66.0	536.0	995.0	4133.0
t	0	0	0	0	0	0	0	0	0	0	2027.0	7323.0	399.0	173.0	7323.0	7323.0	572.0
MA0881.1_rc_shift10 (Dlx4_rc) 
; oligos_7nt_mkv4_m3 versus MA0881.1_rc (Dlx4_rc); m=72/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.405418; ----------kTAATTr
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	2999.0	1127.0	12054.0	12054.0	499.0	883.0	5213.0
c	0	0	0	0	0	0	0	0	0	0	2286.0	134.0	542.0	38.0	55.0	739.0	145.0
g	0	0	0	0	0	0	0	0	0	0	3703.0	316.0	868.0	85.0	744.0	1500.0	6841.0
t	0	0	0	0	0	0	0	0	0	0	3065.0	12054.0	440.0	88.0	12054.0	12054.0	724.0
MA0910.2_rc_shift10 (HOXD8_rc) 
; oligos_7nt_mkv4_m3 versus MA0910.2_rc (HOXD8_rc); m=73/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.405207; ----------kTAATkr
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	452.0	0.0	3629.0	3629.0	0.0	0.0	1480.0
c	0	0	0	0	0	0	0	0	0	0	551.0	0.0	507.0	0.0	0.0	47.0	0.0
g	0	0	0	0	0	0	0	0	0	0	1683.0	0.0	0.0	0.0	0.0	3006.0	2150.0
t	0	0	0	0	0	0	0	0	0	0	943.0	3629.0	178.0	0.0	3629.0	3629.0	0.0
MA0882.1_rc_shift10 (DLX6_rc) 
; oligos_7nt_mkv4_m3 versus MA0882.1_rc (DLX6_rc); m=74/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.405123; ----------kTAATTr
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	624.0	193.0	2623.0	2623.0	56.0	184.0	1212.0
c	0	0	0	0	0	0	0	0	0	0	473.0	16.0	68.0	0.0	0.0	143.0	21.0
g	0	0	0	0	0	0	0	0	0	0	823.0	30.0	140.0	0.0	124.0	273.0	1410.0
t	0	0	0	0	0	0	0	0	0	0	703.0	2623.0	48.0	12.0	2623.0	2623.0	137.0
MA0885.1_rc_shift10 (Dlx2_rc) 
; oligos_7nt_mkv4_m3 versus MA0885.1_rc (Dlx2_rc); m=75/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.40425; ----------wTAATTr
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	3697.0	579.0	13749.0	13749.0	179.0	524.0	6340.0
c	0	0	0	0	0	0	0	0	0	0	3065.0	55.0	565.0	0.0	15.0	488.0	135.0
g	0	0	0	0	0	0	0	0	0	0	3277.0	46.0	393.0	0.0	289.0	684.0	7409.0
t	0	0	0	0	0	0	0	0	0	0	3710.0	13749.0	260.0	0.0	13749.0	13749.0	543.0
MA1495.1_shift10 (HOXA1) 
; oligos_7nt_mkv4_m3 versus MA1495.1 (HOXA1); m=76/77; ncol2=8; w=7; offset=5; strand=D; shift=10; score=0.403619; ----------sTAATtA
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	1167.0	0.0	7406.0	7406.0	0.0	0.0	7406.0
c	0	0	0	0	0	0	0	0	0	0	2244.0	1546.0	2083.0	0.0	0.0	1310.0	0.0
g	0	0	0	0	0	0	0	0	0	0	2667.0	0.0	1244.0	0.0	0.0	2265.0	1576.0
t	0	0	0	0	0	0	0	0	0	0	1328.0	7406.0	0.0	0.0	7406.0	7406.0	0.0
MA0675.1_rc_shift10 (NKX6-2_rc) 
; oligos_7nt_mkv4_m3 versus MA0675.1_rc (NKX6-2_rc); m=77/77; ncol2=8; w=7; offset=5; strand=R; shift=10; score=0.401203; ----------tTAATkr
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	3846.0	678.0	18935.0	18935.0	546.0	2582.0	11104.0
c	0	0	0	0	0	0	0	0	0	0	1660.0	775.0	551.0	0.0	191.0	1053.0	814.0
g	0	0	0	0	0	0	0	0	0	0	3457.0	370.0	2233.0	0.0	310.0	7581.0	7831.0
t	0	0	0	0	0	0	0	0	0	0	9971.0	18935.0	2468.0	584.0	18935.0	11354.0	1172.0