/data/rsat/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4_vs_db_jaspar_core_nonredundant_vertebrates.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4_vs_db_jaspar_core_nonredundant_vertebrates
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
	file1 	$RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4.tf
 Output files
	alignments_1ton	$RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.tab
	match_table_txt	$RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4_vs_db_jaspar_core_nonredundant_vertebrates.tab
	html_index   	$RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4_vs_db_jaspar_core_nonredundant_vertebrates_index.html
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4_vs_db_jaspar_core_nonredundant_vertebrates_alignments_1ton.html
	match_table_html	$RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4_vs_db_jaspar_core_nonredundant_vertebrates.html
	prefix       	$RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4_vs_db_jaspar_core_nonredundant_vertebrates
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/oligos_7nt_mkv4_m4/peak-motifs_oligos_7nt_mkv4_m4.tf
		file1	1	15	685
	file2	746 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf
		file2		1		6		24
		file2		2		17		100
		file2		3		10		9897
		file2		4		17		101
		file2		5		17		3851
		file2		6		10		25318
		file2		7		6		27
		file2		8		11		1001
		file2		9		14		101
		file2		10		6		20
		file2		11		8		104
		...	736 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv4_m4 MA0142.1 oligos_7nt_mkv4_m4 Pou5f1::Sox2 0.948 0.829 15 15 14 16 0.8750 0.9333 0.9333 R -1
oligos_7nt_mkv4_m4 MA1152.1 oligos_7nt_mkv4_m4 SOX15 0.805 0.537 15 10 10 15 0.6667 0.6667 1.0000 R 5
oligos_7nt_mkv4_m4 MA0515.1 oligos_7nt_mkv4_m4 Sox6 0.766 0.511 15 10 10 15 0.6667 0.6667 1.0000 R 5
oligos_7nt_mkv4_m4 MA0868.2 oligos_7nt_mkv4_m4 SOX8 0.758 0.505 15 10 10 15 0.6667 0.6667 1.0000 D 5
oligos_7nt_mkv4_m4 MA0078.1 oligos_7nt_mkv4_m4 Sox17 0.943 0.471 15 9 8 16 0.5000 0.5333 0.8889 R 7
oligos_7nt_mkv4_m4 MA0514.1 oligos_7nt_mkv4_m4 Sox3 0.703 0.469 15 10 10 15 0.6667 0.6667 1.0000 R 5
oligos_7nt_mkv4_m4 MA1115.1 oligos_7nt_mkv4_m4 POU5F1 0.877 0.464 15 11 9 17 0.5294 0.6000 0.8182 R -2
oligos_7nt_mkv4_m4 MA0025.2 oligos_7nt_mkv4_m4 NFIL3 0.705 0.456 15 13 11 17 0.6471 0.7333 0.8462 R -2
oligos_7nt_mkv4_m4 MA0077.1 oligos_7nt_mkv4_m4 SOX9 0.760 0.456 15 9 9 15 0.6000 0.6000 1.0000 R 6
oligos_7nt_mkv4_m4 MA0867.2 oligos_7nt_mkv4_m4 SOX4 0.803 0.452 15 10 9 16 0.5625 0.6000 0.9000 D 6
oligos_7nt_mkv4_m4 MA0785.1 oligos_7nt_mkv4_m4 POU2F1 0.754 0.444 15 12 10 17 0.5882 0.6667 0.8333 R -2
oligos_7nt_mkv4_m4 MA0792.1 oligos_7nt_mkv4_m4 POU5F1B 0.886 0.443 15 9 8 16 0.5000 0.5333 0.8889 R -1
oligos_7nt_mkv4_m4 MA0143.4 oligos_7nt_mkv4_m4 SOX2 0.828 0.438 15 11 9 17 0.5294 0.6000 0.8182 D 6
oligos_7nt_mkv4_m4 MA1563.1 oligos_7nt_mkv4_m4 SOX18 0.821 0.438 15 8 8 15 0.5333 0.5333 1.0000 D 7
oligos_7nt_mkv4_m4 MA1120.1 oligos_7nt_mkv4_m4 SOX13 0.817 0.433 15 11 9 17 0.5294 0.6000 0.8182 D 6
oligos_7nt_mkv4_m4 MA0789.1 oligos_7nt_mkv4_m4 POU3F4 0.865 0.432 15 9 8 16 0.5000 0.5333 0.8889 R -1
oligos_7nt_mkv4_m4 MA0627.2 oligos_7nt_mkv4_m4 POU2F3 0.765 0.425 15 13 10 18 0.5556 0.6667 0.7692 R -3
oligos_7nt_mkv4_m4 MA0084.1 oligos_7nt_mkv4_m4 SRY 0.701 0.421 15 9 9 15 0.6000 0.6000 1.0000 D 4
oligos_7nt_mkv4_m4 MA0786.1 oligos_7nt_mkv4_m4 POU3F1 0.835 0.417 15 12 9 18 0.5000 0.6000 0.7500 R -3
oligos_7nt_mkv4_m4 MA0788.1 oligos_7nt_mkv4_m4 POU3F3 0.739 0.411 15 13 10 18 0.5556 0.6667 0.7692 R -3
oligos_7nt_mkv4_m4 MA0787.1 oligos_7nt_mkv4_m4 POU3F2 0.811 0.405 15 12 9 18 0.5000 0.6000 0.7500 R -3 
 Host name	pedagogix
 Job started	2021-02-16.145804
 Job done	2021-02-16.145837
 Seconds	5.37
	user	5.37
	system	0.48
	cuser	25.97
;	csystem	1.47