One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/positions_6nt_m2/peak-motifs_positions_6nt_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/positions_6nt_m2/peak-motifs_positions_6nt_m2_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: positions_6nt_m2_shift0 ; 9 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_6nt_m2_shift0 (positions_6nt_m2)
; positions_6nt_m2; m=0 (reference); ncol1=24; shift=0; ncol=24; tataTGCATwTGCATAwsaawrkr ; Alignment reference a 73 107 44 218 15 26 23 309 18 134 24 25 33 315 23 232 155 70 159 195 86 95 85 112 c 81 70 61 40 29 35 271 8 24 29 13 19 273 3 16 20 45 124 68 48 68 52 73 79 g 79 84 22 37 23 233 14 13 20 32 3 277 11 12 20 56 38 95 42 54 50 131 94 88 t 108 80 214 46 274 47 33 11 279 146 301 20 24 11 282 33 103 52 72 44 137 63 89 62

MA0142.1_rc_shift7 (Pou5f1::Sox2_rc)
; positions_6nt_m2 versus MA0142.1_rc (Pou5f1::Sox2_rc); m=1/8; ncol2=15; w=15; offset=7; strand=R; shift=7; score=0.553918; -------aTtTGCATrwsAAwr-- ; cor=; Ncor= a 0 0 0 0 0 0 0 837.0 53.0 92.0 269.0 196.0 104.0 1332.0 80.0 612.0 907.0 63.0 1231.0 1270.0 701.0 389.0 0 0 c 0 0 0 0 0 0 0 207.0 75.0 315.0 30.0 129.0 1239.0 15.0 24.0 186.0 29.0 825.0 79.0 36.0 28.0 66.0 0 0 g 0 0 0 0 0 0 0 119.0 33.0 68.0 16.0 1029.0 16.0 5.0 30.0 365.0 18.0 363.0 12.0 50.0 58.0 846.0 0 0 t 0 0 0 0 0 0 0 198.0 1200.0 887.0 1050.0 14.0 10.0 17.0 1235.0 206.0 415.0 118.0 47.0 11.0 579.0 63.0 0 0

MA0507.1_shift4 (POU2F2)
; positions_6nt_m2 versus MA0507.1 (POU2F2); m=2/8; ncol2=13; w=13; offset=4; strand=D; shift=4; score=0.470023; ----ykmATTTGCATrw------- ; cor=; Ncor= a 0 0 0 0 415.0 530.0 605.0 2016.0 0.0 256.0 0.0 158.0 0.0 2257.0 0.0 1159.0 594.0 0 0 0 0 0 0 0 c 0 0 0 0 635.0 266.0 825.0 19.0 0.0 2.0 0.0 0.0 2271.0 30.0 2.0 39.0 361.0 0 0 0 0 0 0 0 g 0 0 0 0 402.0 593.0 415.0 1.0 0.0 0.0 0.0 1997.0 0.0 0.0 0.0 613.0 107.0 0 0 0 0 0 0 0 t 0 0 0 0 835.0 898.0 442.0 251.0 2287.0 2029.0 2287.0 132.0 16.0 0.0 2285.0 476.0 1225.0 0 0 0 0 0 0 0

MA0627.2_rc_shift5 (POU2F3_rc)
; positions_6nt_m2 versus MA0627.2_rc (POU2F3_rc); m=3/8; ncol2=13; w=13; offset=5; strand=R; shift=5; score=0.466654; -----wwATTTGCATatw------ ; cor=; Ncor= a 0 0 0 0 0 17245.0 15909.0 43338.0 330.0 3276.0 896.0 3716.0 2827.0 53366.0 931.0 37593.0 13775.0 16525.0 0 0 0 0 0 0 c 0 0 0 0 0 7941.0 13237.0 4098.0 233.0 804.0 138.0 1079.0 51971.0 1251.0 354.0 3029.0 8770.0 10722.0 0 0 0 0 0 0 g 0 0 0 0 0 11936.0 10595.0 3478.0 164.0 567.0 80.0 50288.0 251.0 322.0 194.0 6885.0 6824.0 11383.0 0 0 0 0 0 0 t 0 0 0 0 0 18907.0 16288.0 5115.0 55302.0 51382.0 54915.0 946.0 980.0 1090.0 54550.0 8522.0 26660.0 17399.0 0 0 0 0 0 0

MA0785.1_rc_shift6 (POU2F1_rc)
; positions_6nt_m2 versus MA0785.1_rc (POU2F1_rc); m=4/8; ncol2=12; w=12; offset=6; strand=R; shift=6; score=0.431729; ------aATTwgCATAwt------ ; cor=; Ncor= a 0 0 0 0 0 0 4262.0 10582.0 158.0 787.0 3651.0 3375.0 1326.0 10582.0 43.0 10582.0 5231.0 2075.0 0 0 0 0 0 0 c 0 0 0 0 0 0 2504.0 755.0 51.0 879.0 46.0 1351.0 10582.0 213.0 29.0 474.0 2142.0 1494.0 0 0 0 0 0 0 g 0 0 0 0 0 0 1840.0 457.0 37.0 108.0 33.0 10582.0 82.0 501.0 12.0 1347.0 1046.0 1938.0 0 0 0 0 0 0 t 0 0 0 0 0 0 1976.0 1422.0 10582.0 10582.0 6932.0 300.0 186.0 153.0 10582.0 756.0 5351.0 5076.0 0 0 0 0 0 0

MA0784.1_rc_shift4 (POU1F1_rc)
; positions_6nt_m2 versus MA0784.1_rc (POU1F1_rc); m=5/8; ncol2=14; w=14; offset=4; strand=R; shift=4; score=0.431338; ----cTmATTwGCATAwt------ ; cor=; Ncor= a 0 0 0 0 547.0 273.0 1287.0 2128.0 3.0 85.0 861.0 536.0 176.0 2128.0 19.0 2128.0 1000.0 397.0 0 0 0 0 0 0 c 0 0 0 0 2128.0 194.0 840.0 40.0 0.0 82.0 7.0 164.0 2128.0 26.0 32.0 108.0 187.0 273.0 0 0 0 0 0 0 g 0 0 0 0 479.0 174.0 241.0 37.0 10.0 11.0 12.0 2128.0 11.0 74.0 14.0 83.0 123.0 247.0 0 0 0 0 0 0 t 0 0 0 0 736.0 2128.0 222.0 76.0 2128.0 2128.0 1267.0 98.0 28.0 45.0 2128.0 276.0 1128.0 1211.0 0 0 0 0 0 0

MA0786.1_rc_shift5 (POU3F1_rc)
; positions_6nt_m2 versus MA0786.1_rc (POU3F1_rc); m=6/8; ncol2=12; w=12; offset=5; strand=R; shift=5; score=0.413135; -----wmATTwrCATAw------- ; cor=; Ncor= a 0 0 0 0 0 961.0 1167.0 2471.0 63.0 284.0 1048.0 1119.0 232.0 2471.0 21.0 2471.0 1437.0 0 0 0 0 0 0 0 c 0 0 0 0 0 452.0 620.0 128.0 25.0 130.0 21.0 413.0 2471.0 21.0 26.0 128.0 322.0 0 0 0 0 0 0 0 g 0 0 0 0 0 478.0 302.0 95.0 20.0 103.0 1.0 2471.0 13.0 53.0 7.0 186.0 126.0 0 0 0 0 0 0 0 t 0 0 0 0 0 1510.0 382.0 259.0 2471.0 2471.0 1423.0 170.0 37.0 44.0 2471.0 505.0 1034.0 0 0 0 0 0 0 0

MA0788.1_rc_shift5 (POU3F3_rc)
; positions_6nt_m2 versus MA0788.1_rc (POU3F3_rc); m=7/8; ncol2=13; w=13; offset=5; strand=R; shift=5; score=0.406651; -----waATTwGCATAww------ ; cor=; Ncor= a 0 0 0 0 0 542.0 1078.0 1078.0 14.0 79.0 572.0 343.0 86.0 1078.0 30.0 1078.0 637.0 290.0 0 0 0 0 0 0 c 0 0 0 0 0 115.0 237.0 12.0 15.0 77.0 1.0 118.0 1078.0 49.0 12.0 64.0 131.0 137.0 0 0 0 0 0 0 g 0 0 0 0 0 85.0 141.0 20.0 6.0 11.0 4.0 1078.0 10.0 33.0 11.0 57.0 41.0 75.0 0 0 0 0 0 0 t 0 0 0 0 0 536.0 240.0 53.0 1078.0 1078.0 506.0 28.0 22.0 25.0 1078.0 129.0 440.0 576.0 0 0 0 0 0 0

MA0787.1_rc_shift5 (POU3F2_rc)
; positions_6nt_m2 versus MA0787.1_rc (POU3F2_rc); m=8/8; ncol2=12; w=12; offset=5; strand=R; shift=5; score=0.406512; -----tmATTwGCATAw------- ; cor=; Ncor= a 0 0 0 0 0 562.0 840.0 1292.0 13.0 45.0 604.0 372.0 60.0 1292.0 0.0 1292.0 700.0 0 0 0 0 0 0 0 c 0 0 0 0 0 261.0 452.0 28.0 0.0 32.0 1.0 153.0 1292.0 12.0 25.0 40.0 171.0 0 0 0 0 0 0 0 g 0 0 0 0 0 262.0 165.0 19.0 6.0 16.0 4.0 1292.0 9.0 30.0 16.0 65.0 61.0 0 0 0 0 0 0 0 t 0 0 0 0 0 1292.0 137.0 63.0 1292.0 1292.0 688.0 68.0 19.0 28.0 1292.0 163.0 591.0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_6nt_m2_shift0 (positions_6nt_m2)				; positions_6nt_m2; m=0 (reference); ncol1=24; shift=0; ncol=24; tataTGCATwTGCATAwsaawrkr ; Alignment reference a 73 107 44 218 15 26 23 309 18 134 24 25 33 315 23 232 155 70 159 195 86 95 85 112 c 81 70 61 40 29 35 271 8 24 29 13 19 273 3 16 20 45 124 68 48 68 52 73 79 g 79 84 22 37 23 233 14 13 20 32 3 277 11 12 20 56 38 95 42 54 50 131 94 88 t 108 80 214 46 274 47 33 11 279 146 301 20 24 11 282 33 103 52 72 44 137 63 89 62
MA0142.1_rc_shift7 (Pou5f1::Sox2_rc)				; positions_6nt_m2 versus MA0142.1_rc (Pou5f1::Sox2_rc); m=1/8; ncol2=15; w=15; offset=7; strand=R; shift=7; score=0.553918; -------aTtTGCATrwsAAwr-- ; cor=; Ncor= a 0 0 0 0 0 0 0 837.0 53.0 92.0 269.0 196.0 104.0 1332.0 80.0 612.0 907.0 63.0 1231.0 1270.0 701.0 389.0 0 0 c 0 0 0 0 0 0 0 207.0 75.0 315.0 30.0 129.0 1239.0 15.0 24.0 186.0 29.0 825.0 79.0 36.0 28.0 66.0 0 0 g 0 0 0 0 0 0 0 119.0 33.0 68.0 16.0 1029.0 16.0 5.0 30.0 365.0 18.0 363.0 12.0 50.0 58.0 846.0 0 0 t 0 0 0 0 0 0 0 198.0 1200.0 887.0 1050.0 14.0 10.0 17.0 1235.0 206.0 415.0 118.0 47.0 11.0 579.0 63.0 0 0
MA0507.1_shift4 (POU2F2)				; positions_6nt_m2 versus MA0507.1 (POU2F2); m=2/8; ncol2=13; w=13; offset=4; strand=D; shift=4; score=0.470023; ----ykmATTTGCATrw------- ; cor=; Ncor= a 0 0 0 0 415.0 530.0 605.0 2016.0 0.0 256.0 0.0 158.0 0.0 2257.0 0.0 1159.0 594.0 0 0 0 0 0 0 0 c 0 0 0 0 635.0 266.0 825.0 19.0 0.0 2.0 0.0 0.0 2271.0 30.0 2.0 39.0 361.0 0 0 0 0 0 0 0 g 0 0 0 0 402.0 593.0 415.0 1.0 0.0 0.0 0.0 1997.0 0.0 0.0 0.0 613.0 107.0 0 0 0 0 0 0 0 t 0 0 0 0 835.0 898.0 442.0 251.0 2287.0 2029.0 2287.0 132.0 16.0 0.0 2285.0 476.0 1225.0 0 0 0 0 0 0 0
MA0627.2_rc_shift5 (POU2F3_rc)				; positions_6nt_m2 versus MA0627.2_rc (POU2F3_rc); m=3/8; ncol2=13; w=13; offset=5; strand=R; shift=5; score=0.466654; -----wwATTTGCATatw------ ; cor=; Ncor= a 0 0 0 0 0 17245.0 15909.0 43338.0 330.0 3276.0 896.0 3716.0 2827.0 53366.0 931.0 37593.0 13775.0 16525.0 0 0 0 0 0 0 c 0 0 0 0 0 7941.0 13237.0 4098.0 233.0 804.0 138.0 1079.0 51971.0 1251.0 354.0 3029.0 8770.0 10722.0 0 0 0 0 0 0 g 0 0 0 0 0 11936.0 10595.0 3478.0 164.0 567.0 80.0 50288.0 251.0 322.0 194.0 6885.0 6824.0 11383.0 0 0 0 0 0 0 t 0 0 0 0 0 18907.0 16288.0 5115.0 55302.0 51382.0 54915.0 946.0 980.0 1090.0 54550.0 8522.0 26660.0 17399.0 0 0 0 0 0 0
MA0785.1_rc_shift6 (POU2F1_rc)				; positions_6nt_m2 versus MA0785.1_rc (POU2F1_rc); m=4/8; ncol2=12; w=12; offset=6; strand=R; shift=6; score=0.431729; ------aATTwgCATAwt------ ; cor=; Ncor= a 0 0 0 0 0 0 4262.0 10582.0 158.0 787.0 3651.0 3375.0 1326.0 10582.0 43.0 10582.0 5231.0 2075.0 0 0 0 0 0 0 c 0 0 0 0 0 0 2504.0 755.0 51.0 879.0 46.0 1351.0 10582.0 213.0 29.0 474.0 2142.0 1494.0 0 0 0 0 0 0 g 0 0 0 0 0 0 1840.0 457.0 37.0 108.0 33.0 10582.0 82.0 501.0 12.0 1347.0 1046.0 1938.0 0 0 0 0 0 0 t 0 0 0 0 0 0 1976.0 1422.0 10582.0 10582.0 6932.0 300.0 186.0 153.0 10582.0 756.0 5351.0 5076.0 0 0 0 0 0 0
MA0784.1_rc_shift4 (POU1F1_rc)				; positions_6nt_m2 versus MA0784.1_rc (POU1F1_rc); m=5/8; ncol2=14; w=14; offset=4; strand=R; shift=4; score=0.431338; ----cTmATTwGCATAwt------ ; cor=; Ncor= a 0 0 0 0 547.0 273.0 1287.0 2128.0 3.0 85.0 861.0 536.0 176.0 2128.0 19.0 2128.0 1000.0 397.0 0 0 0 0 0 0 c 0 0 0 0 2128.0 194.0 840.0 40.0 0.0 82.0 7.0 164.0 2128.0 26.0 32.0 108.0 187.0 273.0 0 0 0 0 0 0 g 0 0 0 0 479.0 174.0 241.0 37.0 10.0 11.0 12.0 2128.0 11.0 74.0 14.0 83.0 123.0 247.0 0 0 0 0 0 0 t 0 0 0 0 736.0 2128.0 222.0 76.0 2128.0 2128.0 1267.0 98.0 28.0 45.0 2128.0 276.0 1128.0 1211.0 0 0 0 0 0 0
MA0786.1_rc_shift5 (POU3F1_rc)				; positions_6nt_m2 versus MA0786.1_rc (POU3F1_rc); m=6/8; ncol2=12; w=12; offset=5; strand=R; shift=5; score=0.413135; -----wmATTwrCATAw------- ; cor=; Ncor= a 0 0 0 0 0 961.0 1167.0 2471.0 63.0 284.0 1048.0 1119.0 232.0 2471.0 21.0 2471.0 1437.0 0 0 0 0 0 0 0 c 0 0 0 0 0 452.0 620.0 128.0 25.0 130.0 21.0 413.0 2471.0 21.0 26.0 128.0 322.0 0 0 0 0 0 0 0 g 0 0 0 0 0 478.0 302.0 95.0 20.0 103.0 1.0 2471.0 13.0 53.0 7.0 186.0 126.0 0 0 0 0 0 0 0 t 0 0 0 0 0 1510.0 382.0 259.0 2471.0 2471.0 1423.0 170.0 37.0 44.0 2471.0 505.0 1034.0 0 0 0 0 0 0 0
MA0788.1_rc_shift5 (POU3F3_rc)				; positions_6nt_m2 versus MA0788.1_rc (POU3F3_rc); m=7/8; ncol2=13; w=13; offset=5; strand=R; shift=5; score=0.406651; -----waATTwGCATAww------ ; cor=; Ncor= a 0 0 0 0 0 542.0 1078.0 1078.0 14.0 79.0 572.0 343.0 86.0 1078.0 30.0 1078.0 637.0 290.0 0 0 0 0 0 0 c 0 0 0 0 0 115.0 237.0 12.0 15.0 77.0 1.0 118.0 1078.0 49.0 12.0 64.0 131.0 137.0 0 0 0 0 0 0 g 0 0 0 0 0 85.0 141.0 20.0 6.0 11.0 4.0 1078.0 10.0 33.0 11.0 57.0 41.0 75.0 0 0 0 0 0 0 t 0 0 0 0 0 536.0 240.0 53.0 1078.0 1078.0 506.0 28.0 22.0 25.0 1078.0 129.0 440.0 576.0 0 0 0 0 0 0
MA0787.1_rc_shift5 (POU3F2_rc)				; positions_6nt_m2 versus MA0787.1_rc (POU3F2_rc); m=8/8; ncol2=12; w=12; offset=5; strand=R; shift=5; score=0.406512; -----tmATTwGCATAw------- ; cor=; Ncor= a 0 0 0 0 0 562.0 840.0 1292.0 13.0 45.0 604.0 372.0 60.0 1292.0 0.0 1292.0 700.0 0 0 0 0 0 0 0 c 0 0 0 0 0 261.0 452.0 28.0 0.0 32.0 1.0 153.0 1292.0 12.0 25.0 40.0 171.0 0 0 0 0 0 0 0 g 0 0 0 0 0 262.0 165.0 19.0 6.0 16.0 4.0 1292.0 9.0 30.0 16.0 65.0 61.0 0 0 0 0 0 0 0 t 0 0 0 0 0 1292.0 137.0 63.0 1292.0 1292.0 688.0 68.0 19.0 28.0 1292.0 163.0 591.0 0 0 0 0 0 0 0