One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/positions_6nt_m3/peak-motifs_positions_6nt_m3.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/positions_6nt_m3/peak-motifs_positions_6nt_m3_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: positions_6nt_m3_shift0 ; 5 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
positions_6nt_m3_shift0 (positions_6nt_m3)     
; positions_6nt_m3; m=0 (reference); ncol1=24; shift=0; ncol=24; rywtaTGCATwTGCATAtgyryat
; Alignment reference
a	91	59	83	26	192	14	26	21	261	18	149	13	25	23	261	28	214	55	62	55	114	53	104	57
c	61	81	39	60	24	21	18	236	9	36	22	16	7	239	5	31	12	31	35	124	41	118	46	64
g	77	51	61	20	44	13	209	8	15	16	36	3	242	9	16	17	44	30	162	35	97	43	70	58
t	63	101	109	186	32	244	39	27	7	222	85	260	18	21	10	216	22	176	33	78	40	78	72	113
MA0507.1_shift5 (POU2F2) 
; positions_6nt_m3 versus MA0507.1 (POU2F2); m=1/4; ncol2=13; w=13; offset=5; strand=D; shift=5; score=0.453038; -----ykmATTTGCATrw------
; cor=; Ncor=
a	0	0	0	0	0	415.0	530.0	605.0	2016.0	0.0	256.0	0.0	158.0	0.0	2257.0	0.0	1159.0	594.0	0	0	0	0	0	0
c	0	0	0	0	0	635.0	266.0	825.0	19.0	0.0	2.0	0.0	0.0	2271.0	30.0	2.0	39.0	361.0	0	0	0	0	0	0
g	0	0	0	0	0	402.0	593.0	415.0	1.0	0.0	0.0	0.0	1997.0	0.0	0.0	0.0	613.0	107.0	0	0	0	0	0	0
t	0	0	0	0	0	835.0	898.0	442.0	251.0	2287.0	2029.0	2287.0	132.0	16.0	0.0	2285.0	476.0	1225.0	0	0	0	0	0	0
MA0627.2_rc_shift6 (POU2F3_rc) 
; positions_6nt_m3 versus MA0627.2_rc (POU2F3_rc); m=2/4; ncol2=13; w=13; offset=6; strand=R; shift=6; score=0.443694; ------wwATTTGCATatw-----
; cor=; Ncor=
a	0	0	0	0	0	0	17245.0	15909.0	43338.0	330.0	3276.0	896.0	3716.0	2827.0	53366.0	931.0	37593.0	13775.0	16525.0	0	0	0	0	0
c	0	0	0	0	0	0	7941.0	13237.0	4098.0	233.0	804.0	138.0	1079.0	51971.0	1251.0	354.0	3029.0	8770.0	10722.0	0	0	0	0	0
g	0	0	0	0	0	0	11936.0	10595.0	3478.0	164.0	567.0	80.0	50288.0	251.0	322.0	194.0	6885.0	6824.0	11383.0	0	0	0	0	0
t	0	0	0	0	0	0	18907.0	16288.0	5115.0	55302.0	51382.0	54915.0	946.0	980.0	1090.0	54550.0	8522.0	26660.0	17399.0	0	0	0	0	0
MA0142.1_rc_shift8 (Pou5f1::Sox2_rc) 
; positions_6nt_m3 versus MA0142.1_rc (Pou5f1::Sox2_rc); m=3/4; ncol2=15; w=15; offset=8; strand=R; shift=8; score=0.438656; --------aTtTGCATrwsAAwr-
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	837.0	53.0	92.0	269.0	196.0	104.0	1332.0	80.0	612.0	907.0	63.0	1231.0	1270.0	701.0	389.0	0
c	0	0	0	0	0	0	0	0	207.0	75.0	315.0	30.0	129.0	1239.0	15.0	24.0	186.0	29.0	825.0	79.0	36.0	28.0	66.0	0
g	0	0	0	0	0	0	0	0	119.0	33.0	68.0	16.0	1029.0	16.0	5.0	30.0	365.0	18.0	363.0	12.0	50.0	58.0	846.0	0
t	0	0	0	0	0	0	0	0	198.0	1200.0	887.0	1050.0	14.0	10.0	17.0	1235.0	206.0	415.0	118.0	47.0	11.0	579.0	63.0	0
MA0785.1_rc_shift7 (POU2F1_rc) 
; positions_6nt_m3 versus MA0785.1_rc (POU2F1_rc); m=4/4; ncol2=12; w=12; offset=7; strand=R; shift=7; score=0.403288; -------aATTwgCATAwt-----
; cor=; Ncor=
a	0	0	0	0	0	0	0	4262.0	10582.0	158.0	787.0	3651.0	3375.0	1326.0	10582.0	43.0	10582.0	5231.0	2075.0	0	0	0	0	0
c	0	0	0	0	0	0	0	2504.0	755.0	51.0	879.0	46.0	1351.0	10582.0	213.0	29.0	474.0	2142.0	1494.0	0	0	0	0	0
g	0	0	0	0	0	0	0	1840.0	457.0	37.0	108.0	33.0	10582.0	82.0	501.0	12.0	1347.0	1046.0	1938.0	0	0	0	0	0
t	0	0	0	0	0	0	0	1976.0	1422.0	10582.0	10582.0	6932.0	300.0	186.0	153.0	10582.0	756.0	5351.0	5076.0	0	0	0	0	0