One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/positions_7nt_m2/peak-motifs_positions_7nt_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/positions_7nt_m2/peak-motifs_positions_7nt_m2_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: positions_7nt_m2_shift0 ; 9 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_7nt_m2_shift0 (positions_7nt_m2)
; positions_7nt_m2; m=0 (reference); ncol1=24; shift=0; ncol=24; ydyaTtTgCATATGcAaAtryayr ; Alignment reference a 40 70 21 155 10 55 10 27 16 218 11 204 15 18 47 212 134 186 26 63 55 103 34 78 c 70 38 126 39 38 20 21 5 200 4 18 6 10 12 160 3 33 6 20 31 91 44 77 48 g 47 72 29 19 9 31 4 163 11 7 7 18 2 202 5 20 16 38 43 129 31 58 58 63 t 85 62 66 29 185 136 207 47 15 13 206 14 215 10 30 7 59 12 153 19 65 37 73 53

MA0507.1_shift0 (POU2F2)
; positions_7nt_m2 versus MA0507.1 (POU2F2); m=1/8; ncol2=13; w=13; offset=0; strand=D; shift=0; score=0.496439; ykmATTTGCATrw----------- ; cor=; Ncor= a 415.0 530.0 605.0 2016.0 0.0 256.0 0.0 158.0 0.0 2257.0 0.0 1159.0 594.0 0 0 0 0 0 0 0 0 0 0 0 c 635.0 266.0 825.0 19.0 0.0 2.0 0.0 0.0 2271.0 30.0 2.0 39.0 361.0 0 0 0 0 0 0 0 0 0 0 0 g 402.0 593.0 415.0 1.0 0.0 0.0 0.0 1997.0 0.0 0.0 0.0 613.0 107.0 0 0 0 0 0 0 0 0 0 0 0 t 835.0 898.0 442.0 251.0 2287.0 2029.0 2287.0 132.0 16.0 0.0 2285.0 476.0 1225.0 0 0 0 0 0 0 0 0 0 0 0

MA0627.2_rc_shift1 (POU2F3_rc)
; positions_7nt_m2 versus MA0627.2_rc (POU2F3_rc); m=2/8; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.467354; -wwATTTGCATatw---------- ; cor=; Ncor= a 0 17245.0 15909.0 43338.0 330.0 3276.0 896.0 3716.0 2827.0 53366.0 931.0 37593.0 13775.0 16525.0 0 0 0 0 0 0 0 0 0 0 c 0 7941.0 13237.0 4098.0 233.0 804.0 138.0 1079.0 51971.0 1251.0 354.0 3029.0 8770.0 10722.0 0 0 0 0 0 0 0 0 0 0 g 0 11936.0 10595.0 3478.0 164.0 567.0 80.0 50288.0 251.0 322.0 194.0 6885.0 6824.0 11383.0 0 0 0 0 0 0 0 0 0 0 t 0 18907.0 16288.0 5115.0 55302.0 51382.0 54915.0 946.0 980.0 1090.0 54550.0 8522.0 26660.0 17399.0 0 0 0 0 0 0 0 0 0 0

MA0142.1_rc_shift3 (Pou5f1::Sox2_rc)
; positions_7nt_m2 versus MA0142.1_rc (Pou5f1::Sox2_rc); m=3/8; ncol2=15; w=15; offset=3; strand=R; shift=3; score=0.453157; ---aTtTGCATrwsAAwr------ ; cor=; Ncor= a 0 0 0 837.0 53.0 92.0 269.0 196.0 104.0 1332.0 80.0 612.0 907.0 63.0 1231.0 1270.0 701.0 389.0 0 0 0 0 0 0 c 0 0 0 207.0 75.0 315.0 30.0 129.0 1239.0 15.0 24.0 186.0 29.0 825.0 79.0 36.0 28.0 66.0 0 0 0 0 0 0 g 0 0 0 119.0 33.0 68.0 16.0 1029.0 16.0 5.0 30.0 365.0 18.0 363.0 12.0 50.0 58.0 846.0 0 0 0 0 0 0 t 0 0 0 198.0 1200.0 887.0 1050.0 14.0 10.0 17.0 1235.0 206.0 415.0 118.0 47.0 11.0 579.0 63.0 0 0 0 0 0 0

MA0784.1_rc_shift0 (POU1F1_rc)
; positions_7nt_m2 versus MA0784.1_rc (POU1F1_rc); m=4/8; ncol2=14; w=14; offset=0; strand=R; shift=0; score=0.445991; cTmATTwGCATAwt---------- ; cor=; Ncor= a 547.0 273.0 1287.0 2128.0 3.0 85.0 861.0 536.0 176.0 2128.0 19.0 2128.0 1000.0 397.0 0 0 0 0 0 0 0 0 0 0 c 2128.0 194.0 840.0 40.0 0.0 82.0 7.0 164.0 2128.0 26.0 32.0 108.0 187.0 273.0 0 0 0 0 0 0 0 0 0 0 g 479.0 174.0 241.0 37.0 10.0 11.0 12.0 2128.0 11.0 74.0 14.0 83.0 123.0 247.0 0 0 0 0 0 0 0 0 0 0 t 736.0 2128.0 222.0 76.0 2128.0 2128.0 1267.0 98.0 28.0 45.0 2128.0 276.0 1128.0 1211.0 0 0 0 0 0 0 0 0 0 0

MA0786.1_rc_shift1 (POU3F1_rc)
; positions_7nt_m2 versus MA0786.1_rc (POU3F1_rc); m=5/8; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.423591; -wmATTwrCATAw----------- ; cor=; Ncor= a 0 961.0 1167.0 2471.0 63.0 284.0 1048.0 1119.0 232.0 2471.0 21.0 2471.0 1437.0 0 0 0 0 0 0 0 0 0 0 0 c 0 452.0 620.0 128.0 25.0 130.0 21.0 413.0 2471.0 21.0 26.0 128.0 322.0 0 0 0 0 0 0 0 0 0 0 0 g 0 478.0 302.0 95.0 20.0 103.0 1.0 2471.0 13.0 53.0 7.0 186.0 126.0 0 0 0 0 0 0 0 0 0 0 0 t 0 1510.0 382.0 259.0 2471.0 2471.0 1423.0 170.0 37.0 44.0 2471.0 505.0 1034.0 0 0 0 0 0 0 0 0 0 0 0

MA0787.1_rc_shift1 (POU3F2_rc)
; positions_7nt_m2 versus MA0787.1_rc (POU3F2_rc); m=6/8; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.419217; -tmATTwGCATAw----------- ; cor=; Ncor= a 0 562.0 840.0 1292.0 13.0 45.0 604.0 372.0 60.0 1292.0 0.0 1292.0 700.0 0 0 0 0 0 0 0 0 0 0 0 c 0 261.0 452.0 28.0 0.0 32.0 1.0 153.0 1292.0 12.0 25.0 40.0 171.0 0 0 0 0 0 0 0 0 0 0 0 g 0 262.0 165.0 19.0 6.0 16.0 4.0 1292.0 9.0 30.0 16.0 65.0 61.0 0 0 0 0 0 0 0 0 0 0 0 t 0 1292.0 137.0 63.0 1292.0 1292.0 688.0 68.0 19.0 28.0 1292.0 163.0 591.0 0 0 0 0 0 0 0 0 0 0 0

MA0785.1_rc_shift2 (POU2F1_rc)
; positions_7nt_m2 versus MA0785.1_rc (POU2F1_rc); m=7/8; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.409191; --aATTwgCATAwt---------- ; cor=; Ncor= a 0 0 4262.0 10582.0 158.0 787.0 3651.0 3375.0 1326.0 10582.0 43.0 10582.0 5231.0 2075.0 0 0 0 0 0 0 0 0 0 0 c 0 0 2504.0 755.0 51.0 879.0 46.0 1351.0 10582.0 213.0 29.0 474.0 2142.0 1494.0 0 0 0 0 0 0 0 0 0 0 g 0 0 1840.0 457.0 37.0 108.0 33.0 10582.0 82.0 501.0 12.0 1347.0 1046.0 1938.0 0 0 0 0 0 0 0 0 0 0 t 0 0 1976.0 1422.0 10582.0 10582.0 6932.0 300.0 186.0 153.0 10582.0 756.0 5351.0 5076.0 0 0 0 0 0 0 0 0 0 0

MA1115.1_rc_shift2 (POU5F1_rc)
; positions_7nt_m2 versus MA1115.1_rc (POU5F1_rc); m=8/8; ncol2=11; w=11; offset=2; strand=R; shift=2; score=0.40003; --haTTTGCATww----------- ; cor=; Ncor= a 0 0 3637.0 6383.0 307.0 838.0 1108.0 1723.0 634.0 12834.0 70.0 4818.0 4846.0 0 0 0 0 0 0 0 0 0 0 0 c 0 0 3551.0 2071.0 257.0 1026.0 118.0 548.0 11571.0 67.0 229.0 1908.0 1996.0 0 0 0 0 0 0 0 0 0 0 0 g 0 0 2450.0 2104.0 270.0 690.0 132.0 10310.0 192.0 130.0 122.0 2785.0 1290.0 0 0 0 0 0 0 0 0 0 0 0 t 0 0 3476.0 2556.0 12280.0 10560.0 11756.0 533.0 717.0 83.0 12693.0 3603.0 4982.0 0 0 0 0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_7nt_m2_shift0 (positions_7nt_m2)				; positions_7nt_m2; m=0 (reference); ncol1=24; shift=0; ncol=24; ydyaTtTgCATATGcAaAtryayr ; Alignment reference a 40 70 21 155 10 55 10 27 16 218 11 204 15 18 47 212 134 186 26 63 55 103 34 78 c 70 38 126 39 38 20 21 5 200 4 18 6 10 12 160 3 33 6 20 31 91 44 77 48 g 47 72 29 19 9 31 4 163 11 7 7 18 2 202 5 20 16 38 43 129 31 58 58 63 t 85 62 66 29 185 136 207 47 15 13 206 14 215 10 30 7 59 12 153 19 65 37 73 53
MA0507.1_shift0 (POU2F2)				; positions_7nt_m2 versus MA0507.1 (POU2F2); m=1/8; ncol2=13; w=13; offset=0; strand=D; shift=0; score=0.496439; ykmATTTGCATrw----------- ; cor=; Ncor= a 415.0 530.0 605.0 2016.0 0.0 256.0 0.0 158.0 0.0 2257.0 0.0 1159.0 594.0 0 0 0 0 0 0 0 0 0 0 0 c 635.0 266.0 825.0 19.0 0.0 2.0 0.0 0.0 2271.0 30.0 2.0 39.0 361.0 0 0 0 0 0 0 0 0 0 0 0 g 402.0 593.0 415.0 1.0 0.0 0.0 0.0 1997.0 0.0 0.0 0.0 613.0 107.0 0 0 0 0 0 0 0 0 0 0 0 t 835.0 898.0 442.0 251.0 2287.0 2029.0 2287.0 132.0 16.0 0.0 2285.0 476.0 1225.0 0 0 0 0 0 0 0 0 0 0 0
MA0627.2_rc_shift1 (POU2F3_rc)				; positions_7nt_m2 versus MA0627.2_rc (POU2F3_rc); m=2/8; ncol2=13; w=13; offset=1; strand=R; shift=1; score=0.467354; -wwATTTGCATatw---------- ; cor=; Ncor= a 0 17245.0 15909.0 43338.0 330.0 3276.0 896.0 3716.0 2827.0 53366.0 931.0 37593.0 13775.0 16525.0 0 0 0 0 0 0 0 0 0 0 c 0 7941.0 13237.0 4098.0 233.0 804.0 138.0 1079.0 51971.0 1251.0 354.0 3029.0 8770.0 10722.0 0 0 0 0 0 0 0 0 0 0 g 0 11936.0 10595.0 3478.0 164.0 567.0 80.0 50288.0 251.0 322.0 194.0 6885.0 6824.0 11383.0 0 0 0 0 0 0 0 0 0 0 t 0 18907.0 16288.0 5115.0 55302.0 51382.0 54915.0 946.0 980.0 1090.0 54550.0 8522.0 26660.0 17399.0 0 0 0 0 0 0 0 0 0 0
MA0142.1_rc_shift3 (Pou5f1::Sox2_rc)				; positions_7nt_m2 versus MA0142.1_rc (Pou5f1::Sox2_rc); m=3/8; ncol2=15; w=15; offset=3; strand=R; shift=3; score=0.453157; ---aTtTGCATrwsAAwr------ ; cor=; Ncor= a 0 0 0 837.0 53.0 92.0 269.0 196.0 104.0 1332.0 80.0 612.0 907.0 63.0 1231.0 1270.0 701.0 389.0 0 0 0 0 0 0 c 0 0 0 207.0 75.0 315.0 30.0 129.0 1239.0 15.0 24.0 186.0 29.0 825.0 79.0 36.0 28.0 66.0 0 0 0 0 0 0 g 0 0 0 119.0 33.0 68.0 16.0 1029.0 16.0 5.0 30.0 365.0 18.0 363.0 12.0 50.0 58.0 846.0 0 0 0 0 0 0 t 0 0 0 198.0 1200.0 887.0 1050.0 14.0 10.0 17.0 1235.0 206.0 415.0 118.0 47.0 11.0 579.0 63.0 0 0 0 0 0 0
MA0784.1_rc_shift0 (POU1F1_rc)				; positions_7nt_m2 versus MA0784.1_rc (POU1F1_rc); m=4/8; ncol2=14; w=14; offset=0; strand=R; shift=0; score=0.445991; cTmATTwGCATAwt---------- ; cor=; Ncor= a 547.0 273.0 1287.0 2128.0 3.0 85.0 861.0 536.0 176.0 2128.0 19.0 2128.0 1000.0 397.0 0 0 0 0 0 0 0 0 0 0 c 2128.0 194.0 840.0 40.0 0.0 82.0 7.0 164.0 2128.0 26.0 32.0 108.0 187.0 273.0 0 0 0 0 0 0 0 0 0 0 g 479.0 174.0 241.0 37.0 10.0 11.0 12.0 2128.0 11.0 74.0 14.0 83.0 123.0 247.0 0 0 0 0 0 0 0 0 0 0 t 736.0 2128.0 222.0 76.0 2128.0 2128.0 1267.0 98.0 28.0 45.0 2128.0 276.0 1128.0 1211.0 0 0 0 0 0 0 0 0 0 0
MA0786.1_rc_shift1 (POU3F1_rc)				; positions_7nt_m2 versus MA0786.1_rc (POU3F1_rc); m=5/8; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.423591; -wmATTwrCATAw----------- ; cor=; Ncor= a 0 961.0 1167.0 2471.0 63.0 284.0 1048.0 1119.0 232.0 2471.0 21.0 2471.0 1437.0 0 0 0 0 0 0 0 0 0 0 0 c 0 452.0 620.0 128.0 25.0 130.0 21.0 413.0 2471.0 21.0 26.0 128.0 322.0 0 0 0 0 0 0 0 0 0 0 0 g 0 478.0 302.0 95.0 20.0 103.0 1.0 2471.0 13.0 53.0 7.0 186.0 126.0 0 0 0 0 0 0 0 0 0 0 0 t 0 1510.0 382.0 259.0 2471.0 2471.0 1423.0 170.0 37.0 44.0 2471.0 505.0 1034.0 0 0 0 0 0 0 0 0 0 0 0
MA0787.1_rc_shift1 (POU3F2_rc)				; positions_7nt_m2 versus MA0787.1_rc (POU3F2_rc); m=6/8; ncol2=12; w=12; offset=1; strand=R; shift=1; score=0.419217; -tmATTwGCATAw----------- ; cor=; Ncor= a 0 562.0 840.0 1292.0 13.0 45.0 604.0 372.0 60.0 1292.0 0.0 1292.0 700.0 0 0 0 0 0 0 0 0 0 0 0 c 0 261.0 452.0 28.0 0.0 32.0 1.0 153.0 1292.0 12.0 25.0 40.0 171.0 0 0 0 0 0 0 0 0 0 0 0 g 0 262.0 165.0 19.0 6.0 16.0 4.0 1292.0 9.0 30.0 16.0 65.0 61.0 0 0 0 0 0 0 0 0 0 0 0 t 0 1292.0 137.0 63.0 1292.0 1292.0 688.0 68.0 19.0 28.0 1292.0 163.0 591.0 0 0 0 0 0 0 0 0 0 0 0
MA0785.1_rc_shift2 (POU2F1_rc)				; positions_7nt_m2 versus MA0785.1_rc (POU2F1_rc); m=7/8; ncol2=12; w=12; offset=2; strand=R; shift=2; score=0.409191; --aATTwgCATAwt---------- ; cor=; Ncor= a 0 0 4262.0 10582.0 158.0 787.0 3651.0 3375.0 1326.0 10582.0 43.0 10582.0 5231.0 2075.0 0 0 0 0 0 0 0 0 0 0 c 0 0 2504.0 755.0 51.0 879.0 46.0 1351.0 10582.0 213.0 29.0 474.0 2142.0 1494.0 0 0 0 0 0 0 0 0 0 0 g 0 0 1840.0 457.0 37.0 108.0 33.0 10582.0 82.0 501.0 12.0 1347.0 1046.0 1938.0 0 0 0 0 0 0 0 0 0 0 t 0 0 1976.0 1422.0 10582.0 10582.0 6932.0 300.0 186.0 153.0 10582.0 756.0 5351.0 5076.0 0 0 0 0 0 0 0 0 0 0
MA1115.1_rc_shift2 (POU5F1_rc)				; positions_7nt_m2 versus MA1115.1_rc (POU5F1_rc); m=8/8; ncol2=11; w=11; offset=2; strand=R; shift=2; score=0.40003; --haTTTGCATww----------- ; cor=; Ncor= a 0 0 3637.0 6383.0 307.0 838.0 1108.0 1723.0 634.0 12834.0 70.0 4818.0 4846.0 0 0 0 0 0 0 0 0 0 0 0 c 0 0 3551.0 2071.0 257.0 1026.0 118.0 548.0 11571.0 67.0 229.0 1908.0 1996.0 0 0 0 0 0 0 0 0 0 0 0 g 0 0 2450.0 2104.0 270.0 690.0 132.0 10310.0 192.0 130.0 122.0 2785.0 1290.0 0 0 0 0 0 0 0 0 0 0 0 t 0 0 3476.0 2556.0 12280.0 10560.0 11756.0 533.0 717.0 83.0 12693.0 3603.0 4982.0 0 0 0 0 0 0 0 0 0 0 0