One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/positions_7nt_m4/peak-motifs_positions_7nt_m4.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.144431_2021-02-16.144431_tXA9Xd/results/discovered_motifs/positions_7nt_m4/peak-motifs_positions_7nt_m4_vs_db_jaspar_core_nonredundant_vertebrates

One-to-n matrix alignment; reference matrix: positions_7nt_m4_shift0 ; 10 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_7nt_m4_shift0 (positions_7nt_m4)
; positions_7nt_m4; m=0 (reference); ncol1=22; shift=0; ncol=22; cywTTgtyATGCAAATgmarry ; Alignment reference a 130 129 352 59 95 101 191 129 765 21 23 44 727 603 785 70 138 211 384 230 226 176 c 308 364 98 82 53 159 42 374 8 4 7 670 11 38 9 69 95 285 150 199 176 241 g 197 96 93 50 62 466 77 78 21 7 741 41 16 77 22 59 470 175 181 213 231 173 t 199 245 291 643 624 108 524 253 40 802 63 79 80 116 18 636 131 163 119 192 201 244

MA0142.1_shift1 (Pou5f1::Sox2)
; positions_7nt_m4 versus MA0142.1 (Pou5f1::Sox2); m=1/9; ncol2=15; w=15; offset=1; strand=D; shift=1; score=0.661009; -ywTTswyATGCAaAt------ ; cor=; Ncor= a 0 63.0 579.0 11.0 47.0 118.0 415.0 206.0 1235.0 17.0 10.0 14.0 1050.0 887.0 1200.0 198.0 0 0 0 0 0 0 c 0 846.0 58.0 50.0 12.0 363.0 18.0 365.0 30.0 5.0 16.0 1029.0 16.0 68.0 33.0 119.0 0 0 0 0 0 0 g 0 66.0 28.0 36.0 79.0 825.0 29.0 186.0 24.0 15.0 1239.0 129.0 30.0 315.0 75.0 207.0 0 0 0 0 0 0 t 0 389.0 701.0 1270.0 1231.0 63.0 907.0 612.0 80.0 1332.0 104.0 196.0 269.0 92.0 53.0 837.0 0 0 0 0 0 0

MA0507.1_rc_shift6 (POU2F2_rc)
; positions_7nt_m4 versus MA0507.1_rc (POU2F2_rc); m=2/9; ncol2=13; w=13; offset=6; strand=R; shift=6; score=0.562095; ------wyATGCAAATkmr--- ; cor=; Ncor= a 0 0 0 0 0 0 1225.0 476.0 2285.0 0.0 16.0 132.0 2287.0 2029.0 2287.0 251.0 442.0 898.0 835.0 0 0 0 c 0 0 0 0 0 0 107.0 613.0 0.0 0.0 0.0 1997.0 0.0 0.0 0.0 1.0 415.0 593.0 402.0 0 0 0 g 0 0 0 0 0 0 361.0 39.0 2.0 30.0 2271.0 0.0 0.0 2.0 0.0 19.0 825.0 266.0 635.0 0 0 0 t 0 0 0 0 0 0 594.0 1159.0 0.0 2257.0 0.0 158.0 0.0 256.0 0.0 2016.0 605.0 530.0 415.0 0 0 0

MA0627.2_shift5 (POU2F3)
; positions_7nt_m4 versus MA0627.2 (POU2F3); m=3/9; ncol2=13; w=13; offset=5; strand=D; shift=5; score=0.536272; -----watATGCAAATww---- ; cor=; Ncor= a 0 0 0 0 0 17399.0 26660.0 8522.0 54550.0 1090.0 980.0 946.0 54915.0 51382.0 55302.0 5115.0 16288.0 18907.0 0 0 0 0 c 0 0 0 0 0 11383.0 6824.0 6885.0 194.0 322.0 251.0 50288.0 80.0 567.0 164.0 3478.0 10595.0 11936.0 0 0 0 0 g 0 0 0 0 0 10722.0 8770.0 3029.0 354.0 1251.0 51971.0 1079.0 138.0 804.0 233.0 4098.0 13237.0 7941.0 0 0 0 0 t 0 0 0 0 0 16525.0 13775.0 37593.0 931.0 53366.0 2827.0 3716.0 896.0 3276.0 330.0 43338.0 15909.0 17245.0 0 0 0 0

MA0784.1_shift5 (POU1F1)
; positions_7nt_m4 versus MA0784.1 (POU1F1); m=4/9; ncol2=14; w=14; offset=5; strand=D; shift=5; score=0.518736; -----awTATGCwAATkAg--- ; cor=; Ncor= a 0 0 0 0 0 1211.0 1128.0 276.0 2128.0 45.0 28.0 98.0 1267.0 2128.0 2128.0 76.0 222.0 2128.0 736.0 0 0 0 c 0 0 0 0 0 247.0 123.0 83.0 14.0 74.0 11.0 2128.0 12.0 11.0 10.0 37.0 241.0 174.0 479.0 0 0 0 g 0 0 0 0 0 273.0 187.0 108.0 32.0 26.0 2128.0 164.0 7.0 82.0 0.0 40.0 840.0 194.0 2128.0 0 0 0 t 0 0 0 0 0 397.0 1000.0 2128.0 19.0 2128.0 176.0 536.0 861.0 85.0 3.0 2128.0 1287.0 273.0 547.0 0 0 0

MA0786.1_shift6 (POU3F1)
; positions_7nt_m4 versus MA0786.1 (POU3F1); m=5/9; ncol2=12; w=12; offset=6; strand=D; shift=6; score=0.486014; ------wTATGywAATkw---- ; cor=; Ncor= a 0 0 0 0 0 0 1034.0 505.0 2471.0 44.0 37.0 170.0 1423.0 2471.0 2471.0 259.0 382.0 1510.0 0 0 0 0 c 0 0 0 0 0 0 126.0 186.0 7.0 53.0 13.0 2471.0 1.0 103.0 20.0 95.0 302.0 478.0 0 0 0 0 g 0 0 0 0 0 0 322.0 128.0 26.0 21.0 2471.0 413.0 21.0 130.0 25.0 128.0 620.0 452.0 0 0 0 0 t 0 0 0 0 0 0 1437.0 2471.0 21.0 2471.0 232.0 1119.0 1048.0 284.0 63.0 2471.0 1167.0 961.0 0 0 0 0

MA0785.1_shift5 (POU2F1)
; positions_7nt_m4 versus MA0785.1 (POU2F1); m=6/9; ncol2=12; w=12; offset=5; strand=D; shift=5; score=0.477714; -----awTATGcwAATt----- ; cor=; Ncor= a 0 0 0 0 0 5076.0 5351.0 756.0 10582.0 153.0 186.0 300.0 6932.0 10582.0 10582.0 1422.0 1976.0 0 0 0 0 0 c 0 0 0 0 0 1938.0 1046.0 1347.0 12.0 501.0 82.0 10582.0 33.0 108.0 37.0 457.0 1840.0 0 0 0 0 0 g 0 0 0 0 0 1494.0 2142.0 474.0 29.0 213.0 10582.0 1351.0 46.0 879.0 51.0 755.0 2504.0 0 0 0 0 0 t 0 0 0 0 0 2075.0 5231.0 10582.0 43.0 10582.0 1326.0 3375.0 3651.0 787.0 158.0 10582.0 4262.0 0 0 0 0 0

MA0788.1_shift5 (POU3F3)
; positions_7nt_m4 versus MA0788.1 (POU3F3); m=7/9; ncol2=13; w=13; offset=5; strand=D; shift=5; score=0.477583; -----wwTATGCwAATtw---- ; cor=; Ncor= a 0 0 0 0 0 576.0 440.0 129.0 1078.0 25.0 22.0 28.0 506.0 1078.0 1078.0 53.0 240.0 536.0 0 0 0 0 c 0 0 0 0 0 75.0 41.0 57.0 11.0 33.0 10.0 1078.0 4.0 11.0 6.0 20.0 141.0 85.0 0 0 0 0 g 0 0 0 0 0 137.0 131.0 64.0 12.0 49.0 1078.0 118.0 1.0 77.0 15.0 12.0 237.0 115.0 0 0 0 0 t 0 0 0 0 0 290.0 637.0 1078.0 30.0 1078.0 86.0 343.0 572.0 79.0 14.0 1078.0 1078.0 542.0 0 0 0 0

MA0787.1_shift6 (POU3F2)
; positions_7nt_m4 versus MA0787.1 (POU3F2); m=8/9; ncol2=12; w=12; offset=6; strand=D; shift=6; score=0.476318; ------wTATGCwAATka---- ; cor=; Ncor= a 0 0 0 0 0 0 591.0 163.0 1292.0 28.0 19.0 68.0 688.0 1292.0 1292.0 63.0 137.0 1292.0 0 0 0 0 c 0 0 0 0 0 0 61.0 65.0 16.0 30.0 9.0 1292.0 4.0 16.0 6.0 19.0 165.0 262.0 0 0 0 0 g 0 0 0 0 0 0 171.0 40.0 25.0 12.0 1292.0 153.0 1.0 32.0 0.0 28.0 452.0 261.0 0 0 0 0 t 0 0 0 0 0 0 700.0 1292.0 0.0 1292.0 60.0 372.0 604.0 45.0 13.0 1292.0 840.0 562.0 0 0 0 0

MA1115.1_shift6 (POU5F1)
; positions_7nt_m4 versus MA1115.1 (POU5F1); m=9/9; ncol2=11; w=11; offset=6; strand=D; shift=6; score=0.476298; ------wwATGCAAAtd----- ; cor=; Ncor= a 0 0 0 0 0 0 4982.0 3603.0 12693.0 83.0 717.0 533.0 11756.0 10560.0 12280.0 2556.0 3476.0 0 0 0 0 0 c 0 0 0 0 0 0 1290.0 2785.0 122.0 130.0 192.0 10310.0 132.0 690.0 270.0 2104.0 2450.0 0 0 0 0 0 g 0 0 0 0 0 0 1996.0 1908.0 229.0 67.0 11571.0 548.0 118.0 1026.0 257.0 2071.0 3551.0 0 0 0 0 0 t 0 0 0 0 0 0 4846.0 4818.0 70.0 12834.0 634.0 1723.0 1108.0 838.0 307.0 6383.0 3637.0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_7nt_m4_shift0 (positions_7nt_m4)				; positions_7nt_m4; m=0 (reference); ncol1=22; shift=0; ncol=22; cywTTgtyATGCAAATgmarry ; Alignment reference a 130 129 352 59 95 101 191 129 765 21 23 44 727 603 785 70 138 211 384 230 226 176 c 308 364 98 82 53 159 42 374 8 4 7 670 11 38 9 69 95 285 150 199 176 241 g 197 96 93 50 62 466 77 78 21 7 741 41 16 77 22 59 470 175 181 213 231 173 t 199 245 291 643 624 108 524 253 40 802 63 79 80 116 18 636 131 163 119 192 201 244
MA0142.1_shift1 (Pou5f1::Sox2)				; positions_7nt_m4 versus MA0142.1 (Pou5f1::Sox2); m=1/9; ncol2=15; w=15; offset=1; strand=D; shift=1; score=0.661009; -ywTTswyATGCAaAt------ ; cor=; Ncor= a 0 63.0 579.0 11.0 47.0 118.0 415.0 206.0 1235.0 17.0 10.0 14.0 1050.0 887.0 1200.0 198.0 0 0 0 0 0 0 c 0 846.0 58.0 50.0 12.0 363.0 18.0 365.0 30.0 5.0 16.0 1029.0 16.0 68.0 33.0 119.0 0 0 0 0 0 0 g 0 66.0 28.0 36.0 79.0 825.0 29.0 186.0 24.0 15.0 1239.0 129.0 30.0 315.0 75.0 207.0 0 0 0 0 0 0 t 0 389.0 701.0 1270.0 1231.0 63.0 907.0 612.0 80.0 1332.0 104.0 196.0 269.0 92.0 53.0 837.0 0 0 0 0 0 0
MA0507.1_rc_shift6 (POU2F2_rc)				; positions_7nt_m4 versus MA0507.1_rc (POU2F2_rc); m=2/9; ncol2=13; w=13; offset=6; strand=R; shift=6; score=0.562095; ------wyATGCAAATkmr--- ; cor=; Ncor= a 0 0 0 0 0 0 1225.0 476.0 2285.0 0.0 16.0 132.0 2287.0 2029.0 2287.0 251.0 442.0 898.0 835.0 0 0 0 c 0 0 0 0 0 0 107.0 613.0 0.0 0.0 0.0 1997.0 0.0 0.0 0.0 1.0 415.0 593.0 402.0 0 0 0 g 0 0 0 0 0 0 361.0 39.0 2.0 30.0 2271.0 0.0 0.0 2.0 0.0 19.0 825.0 266.0 635.0 0 0 0 t 0 0 0 0 0 0 594.0 1159.0 0.0 2257.0 0.0 158.0 0.0 256.0 0.0 2016.0 605.0 530.0 415.0 0 0 0
MA0627.2_shift5 (POU2F3)				; positions_7nt_m4 versus MA0627.2 (POU2F3); m=3/9; ncol2=13; w=13; offset=5; strand=D; shift=5; score=0.536272; -----watATGCAAATww---- ; cor=; Ncor= a 0 0 0 0 0 17399.0 26660.0 8522.0 54550.0 1090.0 980.0 946.0 54915.0 51382.0 55302.0 5115.0 16288.0 18907.0 0 0 0 0 c 0 0 0 0 0 11383.0 6824.0 6885.0 194.0 322.0 251.0 50288.0 80.0 567.0 164.0 3478.0 10595.0 11936.0 0 0 0 0 g 0 0 0 0 0 10722.0 8770.0 3029.0 354.0 1251.0 51971.0 1079.0 138.0 804.0 233.0 4098.0 13237.0 7941.0 0 0 0 0 t 0 0 0 0 0 16525.0 13775.0 37593.0 931.0 53366.0 2827.0 3716.0 896.0 3276.0 330.0 43338.0 15909.0 17245.0 0 0 0 0
MA0784.1_shift5 (POU1F1)				; positions_7nt_m4 versus MA0784.1 (POU1F1); m=4/9; ncol2=14; w=14; offset=5; strand=D; shift=5; score=0.518736; -----awTATGCwAATkAg--- ; cor=; Ncor= a 0 0 0 0 0 1211.0 1128.0 276.0 2128.0 45.0 28.0 98.0 1267.0 2128.0 2128.0 76.0 222.0 2128.0 736.0 0 0 0 c 0 0 0 0 0 247.0 123.0 83.0 14.0 74.0 11.0 2128.0 12.0 11.0 10.0 37.0 241.0 174.0 479.0 0 0 0 g 0 0 0 0 0 273.0 187.0 108.0 32.0 26.0 2128.0 164.0 7.0 82.0 0.0 40.0 840.0 194.0 2128.0 0 0 0 t 0 0 0 0 0 397.0 1000.0 2128.0 19.0 2128.0 176.0 536.0 861.0 85.0 3.0 2128.0 1287.0 273.0 547.0 0 0 0
MA0786.1_shift6 (POU3F1)				; positions_7nt_m4 versus MA0786.1 (POU3F1); m=5/9; ncol2=12; w=12; offset=6; strand=D; shift=6; score=0.486014; ------wTATGywAATkw---- ; cor=; Ncor= a 0 0 0 0 0 0 1034.0 505.0 2471.0 44.0 37.0 170.0 1423.0 2471.0 2471.0 259.0 382.0 1510.0 0 0 0 0 c 0 0 0 0 0 0 126.0 186.0 7.0 53.0 13.0 2471.0 1.0 103.0 20.0 95.0 302.0 478.0 0 0 0 0 g 0 0 0 0 0 0 322.0 128.0 26.0 21.0 2471.0 413.0 21.0 130.0 25.0 128.0 620.0 452.0 0 0 0 0 t 0 0 0 0 0 0 1437.0 2471.0 21.0 2471.0 232.0 1119.0 1048.0 284.0 63.0 2471.0 1167.0 961.0 0 0 0 0
MA0785.1_shift5 (POU2F1)				; positions_7nt_m4 versus MA0785.1 (POU2F1); m=6/9; ncol2=12; w=12; offset=5; strand=D; shift=5; score=0.477714; -----awTATGcwAATt----- ; cor=; Ncor= a 0 0 0 0 0 5076.0 5351.0 756.0 10582.0 153.0 186.0 300.0 6932.0 10582.0 10582.0 1422.0 1976.0 0 0 0 0 0 c 0 0 0 0 0 1938.0 1046.0 1347.0 12.0 501.0 82.0 10582.0 33.0 108.0 37.0 457.0 1840.0 0 0 0 0 0 g 0 0 0 0 0 1494.0 2142.0 474.0 29.0 213.0 10582.0 1351.0 46.0 879.0 51.0 755.0 2504.0 0 0 0 0 0 t 0 0 0 0 0 2075.0 5231.0 10582.0 43.0 10582.0 1326.0 3375.0 3651.0 787.0 158.0 10582.0 4262.0 0 0 0 0 0
MA0788.1_shift5 (POU3F3)				; positions_7nt_m4 versus MA0788.1 (POU3F3); m=7/9; ncol2=13; w=13; offset=5; strand=D; shift=5; score=0.477583; -----wwTATGCwAATtw---- ; cor=; Ncor= a 0 0 0 0 0 576.0 440.0 129.0 1078.0 25.0 22.0 28.0 506.0 1078.0 1078.0 53.0 240.0 536.0 0 0 0 0 c 0 0 0 0 0 75.0 41.0 57.0 11.0 33.0 10.0 1078.0 4.0 11.0 6.0 20.0 141.0 85.0 0 0 0 0 g 0 0 0 0 0 137.0 131.0 64.0 12.0 49.0 1078.0 118.0 1.0 77.0 15.0 12.0 237.0 115.0 0 0 0 0 t 0 0 0 0 0 290.0 637.0 1078.0 30.0 1078.0 86.0 343.0 572.0 79.0 14.0 1078.0 1078.0 542.0 0 0 0 0
MA0787.1_shift6 (POU3F2)				; positions_7nt_m4 versus MA0787.1 (POU3F2); m=8/9; ncol2=12; w=12; offset=6; strand=D; shift=6; score=0.476318; ------wTATGCwAATka---- ; cor=; Ncor= a 0 0 0 0 0 0 591.0 163.0 1292.0 28.0 19.0 68.0 688.0 1292.0 1292.0 63.0 137.0 1292.0 0 0 0 0 c 0 0 0 0 0 0 61.0 65.0 16.0 30.0 9.0 1292.0 4.0 16.0 6.0 19.0 165.0 262.0 0 0 0 0 g 0 0 0 0 0 0 171.0 40.0 25.0 12.0 1292.0 153.0 1.0 32.0 0.0 28.0 452.0 261.0 0 0 0 0 t 0 0 0 0 0 0 700.0 1292.0 0.0 1292.0 60.0 372.0 604.0 45.0 13.0 1292.0 840.0 562.0 0 0 0 0
MA1115.1_shift6 (POU5F1)				; positions_7nt_m4 versus MA1115.1 (POU5F1); m=9/9; ncol2=11; w=11; offset=6; strand=D; shift=6; score=0.476298; ------wwATGCAAAtd----- ; cor=; Ncor= a 0 0 0 0 0 0 4982.0 3603.0 12693.0 83.0 717.0 533.0 11756.0 10560.0 12280.0 2556.0 3476.0 0 0 0 0 0 c 0 0 0 0 0 0 1290.0 2785.0 122.0 130.0 192.0 10310.0 132.0 690.0 270.0 2104.0 2450.0 0 0 0 0 0 g 0 0 0 0 0 0 1996.0 1908.0 229.0 67.0 11571.0 548.0 118.0 1026.0 257.0 2071.0 3551.0 0 0 0 0 0 t 0 0 0 0 0 0 4846.0 4818.0 70.0 12834.0 634.0 1723.0 1108.0 838.0 307.0 6383.0 3637.0 0 0 0 0 0