position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.145820_2021-02-16.145820_jZbPOq/data/sequences/peak-motifs_ctrl_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title p300_heart_versus_limb_Blow2010 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.145820_2021-02-16.145820_jZbPOq/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.145820_2021-02-16.145820_jZbPOq/data/sequences/peak-motifs_ctrl_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2021/02/16/peak-motifs.2021-02-16.145820_2021-02-16.145820_jZbPOq/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 1000 Sum of sequence lengths 679550 Min sequence length 0 Max sequence length 2301 Average sequence length 679 Possible positions 679550 Oligonucleotide statistics: Total occurrences 671106 Position interval parameters: Position interval 20 Number of windows 116 Total positions 679550 Degrees of freedom 115 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -58 [-1159,-1140] -1149.5 1 11 2 -57 [-1139,-1120] -1129.5 1 20 3 -56 [-1119,-1100] -1109.5 1 20 4 -55 [-1099,-1080] -1089.5 1 20 5 -54 [-1079,-1060] -1069.5 1 20 6 -53 [-1059,-1040] -1049.5 1 20 7 -52 [-1039,-1020] -1029.5 2 38 8 -51 [-1019,-1000] -1009.5 2 40 9 -50 [-999,-980] -989.5 2 40 10 -49 [-979,-960] -969.5 3 44 11 -48 [-959,-940] -949.5 3 60 12 -47 [-939,-920] -929.5 3 60 13 -46 [-919,-900] -909.5 3 60 14 -45 [-899,-880] -889.5 3 60 15 -44 [-879,-860] -869.5 3 60 16 -43 [-859,-840] -849.5 4 71 17 -42 [-839,-820] -829.5 8 116 18 -41 [-819,-800] -809.5 11 176 19 -40 [-799,-780] -789.5 13 236 20 -39 [-779,-760] -769.5 13 260 21 -38 [-759,-740] -749.5 15 282 22 -37 [-739,-720] -729.5 17 324 23 -36 [-719,-700] -709.5 28 377 24 -35 [-699,-680] -689.5 32 592 25 -34 [-679,-660] -669.5 42 716 26 -33 [-659,-640] -649.5 44 862 27 -32 [-639,-620] -629.5 52 964 28 -31 [-619,-600] -609.5 64 1169 29 -30 [-599,-580] -589.5 66 1296 30 -29 [-579,-560] -569.5 75 1428 31 -28 [-559,-540] -549.5 86 1621 32 -27 [-539,-520] -529.5 97 1882 33 -26 [-519,-500] -509.5 118 2104 34 -25 [-499,-480] -489.5 131 2464 35 -24 [-479,-460] -469.5 169 3048 36 -23 [-459,-440] -449.5 182 3523 37 -22 [-439,-420] -429.5 225 4114 38 -21 [-419,-400] -409.5 276 4824 39 -20 [-399,-380] -389.5 299 5704 40 -19 [-379,-360] -369.5 361 6588 41 -18 [-359,-340] -349.5 389 7528 42 -17 [-339,-320] -329.5 463 8596 43 -16 [-319,-300] -309.5 533 9655 44 -15 [-299,-280] -289.5 569 10948 45 -14 [-279,-260] -269.5 680 12544 46 -13 [-259,-240] -249.5 746 14326 47 -12 [-239,-220] -229.5 832 16036 48 -11 [-219,-200] -209.5 921 17431 49 -10 [-199,-180] -189.5 955 18692 50 -9 [-179,-160] -169.5 984 19408 51 -8 [-159,-140] -149.5 996 19812 52 -7 [-139,-120] -129.5 1000 19992 53 -6 [-119,-100] -109.5 1000 20000 54 -5 [-99,-80] -89.5 1000 20000 55 -4 [-79,-60] -69.5 1000 20000 56 -3 [-59,-40] -49.5 1000 20000 57 -2 [-39,-20] -29.5 1000 20000 58 -1 [-19,0] -9.5 1000 20000 59 0 [1,20] 10.5 1000 20000 60 1 [21,40] 30.5 1000 20000 61 2 [41,60] 50.5 1000 20000 62 3 [61,80] 70.5 1000 20000 63 4 [81,100] 90.5 1000 20000 64 5 [101,120] 110.5 1000 20000 65 6 [121,140] 130.5 1000 19992 66 7 [141,160] 150.5 996 19800 67 8 [161,180] 170.5 984 19366 68 9 [181,200] 190.5 955 18692 69 10 [201,220] 210.5 886 17288 70 11 [221,240] 230.5 832 16000 71 12 [241,260] 250.5 746 14260 72 13 [261,280] 270.5 680 12382 73 14 [281,300] 290.5 569 10948 74 15 [301,320] 310.5 488 9560 75 16 [321,340] 330.5 463 8553 76 17 [341,360] 350.5 389 7500 77 18 [361,380] 370.5 361 6494 78 19 [381,400] 390.5 299 5704 79 20 [401,420] 410.5 246 4752 80 21 [421,440] 430.5 225 4089 81 22 [441,460] 450.5 182 3510 82 23 [461,480] 470.5 169 2995 83 24 [481,500] 490.5 131 2464 84 25 [501,520] 510.5 108 2072 85 26 [521,540] 530.5 97 1879 86 27 [541,560] 550.5 86 1610 87 28 [561,580] 570.5 75 1416 88 29 [581,600] 590.5 66 1296 89 30 [601,620] 610.5 61 1148 90 31 [621,640] 630.5 52 959 91 32 [641,660] 650.5 44 860 92 33 [661,680] 670.5 42 699 93 34 [681,700] 690.5 32 592 94 35 [701,720] 710.5 19 364 95 36 [721,740] 730.5 17 323 96 37 [741,760] 750.5 15 280 97 38 [761,780] 770.5 13 260 98 39 [781,800] 790.5 13 236 99 40 [801,820] 810.5 9 172 100 41 [821,840] 830.5 8 113 101 42 [841,860] 850.5 4 70 102 43 [861,880] 870.5 3 60 103 44 [881,900] 890.5 3 60 104 45 [901,920] 910.5 3 60 105 46 [921,940] 930.5 3 60 106 47 [941,960] 950.5 3 60 107 48 [961,980] 970.5 3 42 108 49 [981,1000] 990.5 2 40 109 50 [1001,1020] 1010.5 2 40 110 51 [1021,1040] 1030.5 2 38 111 52 [1041,1060] 1050.5 1 20 112 53 [1061,1080] 1070.5 1 20 113 54 [1081,1100] 1090.5 1 20 114 55 [1101,1120] 1110.5 1 20 115 56 [1121,1140] 1130.5 1 20 116 57 [1141,1160] 1150.5 1 10 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -1149.5 occurrences in window 1 [-1159,-1140] 11 -1129.5 occurrences in window 2 [-1139,-1120] 12 -1109.5 occurrences in window 3 [-1119,-1100] 13 -1089.5 occurrences in window 4 [-1099,-1080] 14 -1069.5 occurrences in window 5 [-1079,-1060] 15 -1049.5 occurrences in window 6 [-1059,-1040] 16 -1029.5 occurrences in window 7 [-1039,-1020] 17 -1009.5 occurrences in window 8 [-1019,-1000] 18 -989.5 occurrences in window 9 [-999,-980] 19 -969.5 occurrences in window 10 [-979,-960] 20 -949.5 occurrences in window 11 [-959,-940] 21 -929.5 occurrences in window 12 [-939,-920] 22 -909.5 occurrences in window 13 [-919,-900] 23 -889.5 occurrences in window 14 [-899,-880] 24 -869.5 occurrences in window 15 [-879,-860] 25 -849.5 occurrences in window 16 [-859,-840] 26 -829.5 occurrences in window 17 [-839,-820] 27 -809.5 occurrences in window 18 [-819,-800] 28 -789.5 occurrences in window 19 [-799,-780] 29 -769.5 occurrences in window 20 [-779,-760] 30 -749.5 occurrences in window 21 [-759,-740] 31 -729.5 occurrences in window 22 [-739,-720] 32 -709.5 occurrences in window 23 [-719,-700] 33 -689.5 occurrences in window 24 [-699,-680] 34 -669.5 occurrences in window 25 [-679,-660] 35 -649.5 occurrences in window 26 [-659,-640] 36 -629.5 occurrences in window 27 [-639,-620] 37 -609.5 occurrences in window 28 [-619,-600] 38 -589.5 occurrences in window 29 [-599,-580] 39 -569.5 occurrences in window 30 [-579,-560] 40 -549.5 occurrences in window 31 [-559,-540] 41 -529.5 occurrences in window 32 [-539,-520] 42 -509.5 occurrences in window 33 [-519,-500] 43 -489.5 occurrences in window 34 [-499,-480] 44 -469.5 occurrences in window 35 [-479,-460] 45 -449.5 occurrences in window 36 [-459,-440] 46 -429.5 occurrences in window 37 [-439,-420] 47 -409.5 occurrences in window 38 [-419,-400] 48 -389.5 occurrences in window 39 [-399,-380] 49 -369.5 occurrences in window 40 [-379,-360] 50 -349.5 occurrences in window 41 [-359,-340] 51 -329.5 occurrences in window 42 [-339,-320] 52 -309.5 occurrences in window 43 [-319,-300] 53 -289.5 occurrences in window 44 [-299,-280] 54 -269.5 occurrences in window 45 [-279,-260] 55 -249.5 occurrences in window 46 [-259,-240] 56 -229.5 occurrences in window 47 [-239,-220] 57 -209.5 occurrences in window 48 [-219,-200] 58 -189.5 occurrences in window 49 [-199,-180] 59 -169.5 occurrences in window 50 [-179,-160] 60 -149.5 occurrences in window 51 [-159,-140] 61 -129.5 occurrences in window 52 [-139,-120] 62 -109.5 occurrences in window 53 [-119,-100] 63 -89.5 occurrences in window 54 [-99,-80] 64 -69.5 occurrences in window 55 [-79,-60] 65 -49.5 occurrences in window 56 [-59,-40] 66 -29.5 occurrences in window 57 [-39,-20] 67 -9.5 occurrences in window 58 [-19,0] 68 10.5 occurrences in window 59 [1,20] 69 30.5 occurrences in window 60 [21,40] 70 50.5 occurrences in window 61 [41,60] 71 70.5 occurrences in window 62 [61,80] 72 90.5 occurrences in window 63 [81,100] 73 110.5 occurrences in window 64 [101,120] 74 130.5 occurrences in window 65 [121,140] 75 150.5 occurrences in window 66 [141,160] 76 170.5 occurrences in window 67 [161,180] 77 190.5 occurrences in window 68 [181,200] 78 210.5 occurrences in window 69 [201,220] 79 230.5 occurrences in window 70 [221,240] 80 250.5 occurrences in window 71 [241,260] 81 270.5 occurrences in window 72 [261,280] 82 290.5 occurrences in window 73 [281,300] 83 310.5 occurrences in window 74 [301,320] 84 330.5 occurrences in window 75 [321,340] 85 350.5 occurrences in window 76 [341,360] 86 370.5 occurrences in window 77 [361,380] 87 390.5 occurrences in window 78 [381,400] 88 410.5 occurrences in window 79 [401,420] 89 430.5 occurrences in window 80 [421,440] 90 450.5 occurrences in window 81 [441,460] 91 470.5 occurrences in window 82 [461,480] 92 490.5 occurrences in window 83 [481,500] 93 510.5 occurrences in window 84 [501,520] 94 530.5 occurrences in window 85 [521,540] 95 550.5 occurrences in window 86 [541,560] 96 570.5 occurrences in window 87 [561,580] 97 590.5 occurrences in window 88 [581,600] 98 610.5 occurrences in window 89 [601,620] 99 630.5 occurrences in window 90 [621,640] 100 650.5 occurrences in window 91 [641,660] 101 670.5 occurrences in window 92 [661,680] 102 690.5 occurrences in window 93 [681,700] 103 710.5 occurrences in window 94 [701,720] 104 730.5 occurrences in window 95 [721,740] 105 750.5 occurrences in window 96 [741,760] 106 770.5 occurrences in window 97 [761,780] 107 790.5 occurrences in window 98 [781,800] 108 810.5 occurrences in window 99 [801,820] 109 830.5 occurrences in window 100 [821,840] 110 850.5 occurrences in window 101 [841,860] 111 870.5 occurrences in window 102 [861,880] 112 890.5 occurrences in window 103 [881,900] 113 910.5 occurrences in window 104 [901,920] 114 930.5 occurrences in window 105 [921,940] 115 950.5 occurrences in window 106 [941,960] 116 970.5 occurrences in window 107 [961,980] 117 990.5 occurrences in window 108 [981,1000] 118 1010.5 occurrences in window 109 [1001,1020] 119 1030.5 occurrences in window 110 [1021,1040] 120 1050.5 occurrences in window 111 [1041,1060] 121 1070.5 occurrences in window 112 [1061,1080] 122 1090.5 occurrences in window 113 [1081,1100] 123 1110.5 occurrences in window 114 [1101,1120] 124 1130.5 occurrences in window 115 [1121,1140] 125 1150.5 occurrences in window 116 [1141,1160]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -1149.5 | -1129.5 | -1109.5 | -1089.5 | -1069.5 | -1049.5 | -1029.5 | -1009.5 | -989.5 | -969.5 | -949.5 | -929.5 | -909.5 | -889.5 | -869.5 | -849.5 | -829.5 | -809.5 | -789.5 | -769.5 | -749.5 | -729.5 | -709.5 | -689.5 | -669.5 | -649.5 | -629.5 | -609.5 | -589.5 | -569.5 | -549.5 | -529.5 | -509.5 | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 | 510.5 | 530.5 | 550.5 | 570.5 | 590.5 | 610.5 | 630.5 | 650.5 | 670.5 | 690.5 | 710.5 | 730.5 | 750.5 | 770.5 | 790.5 | 810.5 | 830.5 | 850.5 | 870.5 | 890.5 | 910.5 | 930.5 | 950.5 | 970.5 | 990.5 | 1010.5 | 1030.5 | 1050.5 | 1070.5 | 1090.5 | 1110.5 | 1130.5 | 1150.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| c | c | 160812 | 253.3 | 115 | 2.7e-12 | 1.1e-11 | 10.97 | 1 | 3 | 8 | 1 | 6 | 7 | 6 | 14 | 24 | 12 | 9 | 21 | 9 | 9 | 23 | 13 | 23 | 32 | 34 | 55 | 50 | 51 | 69 | 92 | 119 | 144 | 187 | 212 | 255 | 304 | 337 | 393 | 441 | 496 | 554 | 697 | 817 | 963 | 1110 | 1287 | 1634 | 1790 | 2058 | 2268 | 2590 | 3003 | 3453 | 3813 | 4174 | 4703 | 4797 | 4880 | 4881 | 4764 | 4864 | 4872 | 4865 | 5016 | 4902 | 4760 | 4656 | 4793 | 4763 | 4700 | 4640 | 4729 | 4549 | 4482 | 4369 | 3953 | 3785 | 3264 | 2843 | 2428 | 2141 | 1954 | 1729 | 1481 | 1338 | 1102 | 869 | 755 | 683 | 541 | 479 | 432 | 359 | 287 | 271 | 269 | 214 | 172 | 151 | 121 | 76 | 66 | 63 | 66 | 47 | 37 | 29 | 14 | 16 | 12 | 8 | 16 | 23 | 14 | 7 | 10 | 10 | 4 | 1 | 2 | 3 | 9 | 3 |
| a | a | 174215 | 186.4 | 115 | 2.9e-05 | 0.00012 | 3.93 | 2 | 4 | 3 | 8 | 5 | 5 | 10 | 7 | 2 | 11 | 16 | 12 | 15 | 19 | 11 | 19 | 17 | 24 | 55 | 77 | 70 | 67 | 78 | 96 | 156 | 192 | 233 | 278 | 322 | 361 | 381 | 444 | 514 | 530 | 685 | 814 | 955 | 1057 | 1290 | 1494 | 1686 | 2008 | 2236 | 2569 | 2905 | 3293 | 3735 | 4206 | 4515 | 4597 | 4908 | 4879 | 5006 | 4902 | 5070 | 5000 | 4997 | 4970 | 5028 | 5095 | 5184 | 5198 | 5122 | 5115 | 5199 | 5129 | 5059 | 4800 | 4735 | 4526 | 4043 | 3576 | 3225 | 2882 | 2530 | 2128 | 2008 | 1684 | 1480 | 1222 | 1164 | 955 | 818 | 654 | 539 | 456 | 419 | 382 | 344 | 301 | 242 | 227 | 175 | 172 | 94 | 89 | 76 | 66 | 51 | 41 | 14 | 17 | 18 | 16 | 16 | 11 | 10 | 6 | 10 | 8 | 6 | 4 | 8 | 6 | 7 | 5 | 1 |
| t | t | 174024 | 155.2 | 115 | 7.4e-03 | 0.03 | 1.53 | 3 | 2 | 7 | 4 | 7 | 2 | 2 | 11 | 10 | 10 | 9 | 15 | 19 | 17 | 17 | 15 | 13 | 30 | 36 | 51 | 73 | 80 | 106 | 112 | 167 | 174 | 220 | 219 | 291 | 299 | 339 | 422 | 493 | 586 | 638 | 790 | 910 | 1088 | 1245 | 1494 | 1763 | 1999 | 2214 | 2447 | 2719 | 3165 | 3595 | 4067 | 4426 | 4875 | 4879 | 4984 | 4985 | 5200 | 4977 | 5058 | 5170 | 4947 | 5073 | 5099 | 5148 | 5125 | 5042 | 5140 | 5061 | 5018 | 5133 | 5000 | 4832 | 4413 | 4141 | 3670 | 3164 | 2802 | 2464 | 2387 | 1971 | 1741 | 1567 | 1308 | 1073 | 944 | 743 | 671 | 573 | 519 | 412 | 368 | 326 | 284 | 221 | 201 | 165 | 142 | 92 | 76 | 58 | 59 | 65 | 38 | 34 | 22 | 11 | 14 | 15 | 12 | 10 | 15 | 10 | 11 | 17 | 6 | 3 | 6 | 6 | 6 | 4 |
| g | g | 162055 | 152.0 | 115 | 1.2e-02 | 0.048 | 1.32 | 4 | 2 | 2 | 7 | 2 | 6 | 2 | 6 | 4 | 7 | 10 | 12 | 17 | 15 | 9 | 13 | 18 | 30 | 51 | 53 | 52 | 64 | 62 | 77 | 144 | 186 | 201 | 219 | 261 | 284 | 332 | 331 | 394 | 452 | 567 | 747 | 829 | 965 | 1119 | 1376 | 1480 | 1711 | 2053 | 2292 | 2595 | 2901 | 3352 | 3779 | 4165 | 4315 | 4557 | 4760 | 4791 | 4833 | 4836 | 4839 | 4770 | 4874 | 4848 | 4912 | 4917 | 4706 | 4893 | 4865 | 4916 | 4849 | 4721 | 4764 | 4512 | 4160 | 3760 | 3421 | 2888 | 2626 | 2275 | 1970 | 1702 | 1566 | 1295 | 1080 | 947 | 836 | 731 | 578 | 461 | 437 | 361 | 334 | 299 | 234 | 222 | 209 | 182 | 137 | 82 | 72 | 63 | 57 | 73 | 56 | 36 | 17 | 15 | 18 | 21 | 21 | 17 | 7 | 13 | 11 | 5 | 6 | 8 | 6 | 4 | 0 | 2 |
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