peak-motifs p300_heart_versus_limb

Motif discovery

Motif 1 oligos_6nt_vs_ctrl_m1

tySYTATCWsTgy

RCASWGATARSRA

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor tySYTATCWsTgy

Gata1 MA0035.2 R 11 0.8462 0.918 0.777 tySYTATCWsT.. YYCTTATCWSY

Tal1::Gata1 MA0140.1 R 11 0.5500 0.916 0.504 ..SYTATCWsTgy CTTATCWSYCC.......

GATA3 MA0037.1 R 6 0.4615 0.890 0.411 ...YTATCW.... CWATCW

Total maches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

jaspar_pbm_mouse

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor tySYTATCWsTgy

Gata3_1 PB0021.1 R 13 0.5909 0.904 0.534 tySYTATCWsTgy ......YTCTTATCTMTWH...

Gata6_1 PB0023.1 R 13 0.7647 0.890 0.680 tySYTATCWsTgy ...YTCTTATCWMKWT.

Gata5_1 PB0022.1 R 13 0.7647 0.833 0.637 tySYTATCWsTgy ...YYCTTATCAGYWW.

Total maches= 3

[ match table: html text ]
[ alignments (logos): html text ]

custom_motif_collection

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor tySYTATCWsTgy

V$GATA2_02 M00348 R 10 0.7692 0.922 0.710 .ySYTATCWsT.. TSTTATCWCT

V$GATA3_02 M00350 R 10 0.7692 0.887 0.682 .ySYTATCWsT.. TMTTATCTCT

V$GATA_C M00203 R 9 0.6000 0.944 0.566 tySYTATCW.... ..KMYTTATCH

Total maches= 16 (13 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 261 (26.10%)
Max nb of predicted sites per peak: 3
(mm9_chr4_115521903_115522266_+)
Mean nb of predicted sites per peak: 1.19

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_vs_ctrl_m2

rscCwGATAAGma

TKCTTATCWGGSY

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rscCwGATAAGma

Gata1 MA0035.2 D 11 0.8462 0.890 0.753 ..cCwGATAAGma rsWGATAAgrr

Tal1::Gata1 MA0140.1 D 11 0.5500 0.889 0.489 rscCwGATAAG.. .......ggrswGATAAg

Hand1::Tcfe2a MA0092.1 R 9 0.6429 0.770 0.495 rscCwGATA.... .WKCCAGAYS

Total maches= 3

[ match table: html text ]
[ alignments (logos): html text ]

jaspar_pbm_mouse

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rscCwGATAAGma

Gata5_1 PB0022.1 D 13 0.7647 0.868 0.664 rscCwGATAAGma .wwrcTGATAAGrr...

Gata6_1 PB0023.1 D 13 0.7647 0.844 0.645 rscCwGATAAGma .awmkwGATAAGar...

Gata3_1 PB0021.1 D 13 0.5909 0.784 0.463 rscCwGATAAGma ...dwakAGATAAGAr......

Total maches= 3

[ match table: html text ]
[ alignments (logos): html text ]

custom_motif_collection

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rscCwGATAAGma

V$GATA1_04 M00128 D 12 0.8571 0.877 0.751 .scCwGATAAGma dkcwGATArgrv.

V$GATA1_06 M00347 D 10 0.7692 0.849 0.653 ..cCwGATAAGm. myAGATAAsr

V$GATA_C M00203 D 9 0.6000 0.944 0.566 ....wGATAAGma dGATAArkm..

Total maches= 15 (12 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 250 (25.00%)
Max nb of predicted sites per peak: 4
(mm9_chr8_123839444_123840985_+)
Mean nb of predicted sites per peak: 1.18

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_vs_ctrl_m3

syGrkGACAGtrd

HYACTGTCMYCRS

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor syGrkGACAGtrd

Total maches= 0

No match

jaspar_pbm_mouse

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor syGrkGACAGtrd

Total maches= 0

No match

custom_motif_collection

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor syGrkGACAGtrd

V$MEIS1_01 M00419 D 12 0.9231 0.817 0.754 .yGrkGACAGtrd yhrTGACAGrds

V$MZF1_01 M00083 D 7 0.5000 0.846 0.423 syGrkGA...... .gkGGGGA

V$MEIS1AHOXA9_01 M00420 D 9 0.5000 0.819 0.409 ....kGACAGtrd TGACAGkTT.....

Total maches= 3

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 281 (28.10%)
Max nb of predicted sites per peak: 4
(mm9_chr8_122817058_122818100_+)
Mean nb of predicted sites per peak: 1.26

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_vs_ctrl_m4

maGCACCCAsr

YSTGGGTGCTK

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor maGCACCCAsr

Total maches= 0

No match

jaspar_pbm_mouse

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor maGCACCCAsr

Total maches= 0

No match

custom_motif_collection

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor maGCACCCAsr

V$ROAZ_01 M00467 D 9 0.5625 0.876 0.493 ..GCACCCAsr GCACCCWwG.....

V$GLI3_Q5_01 M01657 R 9 0.8182 0.770 0.630 .aGCACCCAs. ACCACCCAS

Total maches= 2

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 188 (18.80%)
Max nb of predicted sites per peak: 3
(mm9_chr9_31060820_31062600_+)
Mean nb of predicted sites per peak: 1.15

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_vs_ctrl_m5

wrAKGwCAsCwk

MWGSTGWCMTYW

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wrAKGwCAsCwk

NR4A2 MA0160.1 D 8 0.6667 0.895 0.596 .rAKGwCAs... aAGGTCAc

RORA_1 MA0071.1 D 8 0.5714 0.898 0.513 wrAKGwCA.... ..cwAGGTCA

ESR1 MA0112.2 D 12 0.6000 0.797 0.478 wrAKGwCAsCwk ...cmaGGtCAcccT.....

Total maches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

jaspar_pbm_mouse

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wrAKGwCAsCwk

Rara_1 PB0053.1 D 12 0.7500 0.781 0.586 wrAKGwCAsCwk ....AAAGGTCAcstg

Total maches= 1

[ match table: html text ]
[ alignments (logos): html text ]

custom_motif_collection

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wrAKGwCAsCwk

V$FXR_Q2 M01268 D 7 0.5833 0.907 0.529 ..AKGwCAs... RGGTCAy

V$ER_Q6_02 M00959 D 11 0.9167 0.812 0.744 .rAKGwCAsCwk cAGGTCAcssy

V$RORA1_01 M00156 D 9 0.5625 0.868 0.489 wrAKGwCAs... ....cwAGGTCAw

Total maches= 19 (16 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 373 (37.30%)
Max nb of predicted sites per peak: 5
(mm9_chr11_88465926_88467246_+)
Mean nb of predicted sites per peak: 1.30

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 oligos_7nt_vs_ctrl_m1

rcwsWGATAAgrav

BTYCTTATCWSWGY

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rcwsWGATAAgrav

Gata1 MA0035.2 D 11 0.7857 0.960 0.754 ..wsWGATAAgra. rsWGATAAgrr

Tal1::Gata1 MA0140.1 D 11 0.5238 0.955 0.500 rcwsWGATAAg... .......ggrswGATAAg

Total maches= 2

[ match table: html text ]
[ alignments (logos): html text ]

jaspar_pbm_mouse

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rcwsWGATAAgrav

Gata6_1 PB0023.1 D 14 0.8235 0.898 0.739 rcwsWGATAAgrav .awmkwGATAAGart..

Gata3_1 PB0021.1 D 14 0.6364 0.901 0.573 rcwsWGATAAgrav ...dwakAGATAAGArw.....

Gata5_1 PB0022.1 D 14 0.8235 0.873 0.719 rcwsWGATAAgrav .wwrcTGATAAGrrg..

Total maches= 3

[ match table: html text ]
[ alignments (logos): html text ]

custom_motif_collection

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rcwsWGATAAgrav

V$GATA2_02 M00348 D 10 0.7143 0.943 0.674 ..wsWGATAAgr.. agwGATAAsa

V$GATA1_04 M00128 D 13 0.9286 0.892 0.829 .cwsWGATAAgrav dkcwGATArgrvb

V$GATA_C M00203 D 10 0.6667 0.943 0.629 ....WGATAAgrav dGATAArkmm.

Total maches= 16 (13 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 322 (32.20%)
Max nb of predicted sites per peak: 4
(mm9_chr1_187295885_187297742_+)
Mean nb of predicted sites per peak: 1.26

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 oligos_7nt_vs_ctrl_m2

ryrCwGATAARrav

BTYYTTATCWGYRY

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ryrCwGATAARrav

Gata1 MA0035.2 D 11 0.7857 0.936 0.736 ..rCwGATAARra. rsWGATAAgrr

Tal1::Gata1 MA0140.1 D 11 0.5238 0.935 0.490 ryrCwGATAAR... .......ggrswGATAAg

Total maches= 2

[ match table: html text ]
[ alignments (logos): html text ]

jaspar_pbm_mouse

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ryrCwGATAARrav

Gata5_1 PB0022.1 D 14 0.8235 0.909 0.748 ryrCwGATAARrav .wwrcTGATAAGrrg..

Gata6_1 PB0023.1 D 14 0.8235 0.838 0.690 ryrCwGATAARrav .awmkwGATAAGart..

Gata3_1 PB0021.1 D 14 0.6364 0.825 0.525 ryrCwGATAARrav ...dwakAGATAAGArw.....

Total maches= 3

[ match table: html text ]
[ alignments (logos): html text ]

custom_motif_collection

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ryrCwGATAARrav

V$GATA1_04 M00128 D 13 0.9286 0.911 0.846 .yrCwGATAARrav dkcwGATArgrvb

V$GATA_C M00203 D 10 0.6667 0.948 0.632 ....wGATAARrav dGATAArkmm.

V$GATA2_02 M00348 D 10 0.7143 0.874 0.624 ..rCwGATAARr.. agwGATAAsa

Total maches= 15 (12 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 220 (22.00%)
Max nb of predicted sites per peak: 3
(mm9_chr7_130548842_130549620_+)
Mean nb of predicted sites per peak: 1.18

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 oligos_7nt_vs_ctrl_m3

ghrACTGTSACmwvy

RBWKGTSACAGTYDC

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ghrACTGTSACmwvy

Total maches= 0

No match

jaspar_pbm_mouse

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ghrACTGTSACmwvy

Total maches= 0

No match

custom_motif_collection

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ghrACTGTSACmwvy

V$MEIS1AHOXA9_01 M00420 R 10 0.5263 0.839 0.442 ghrACTGTSA..... ....WAAMCTGTCA

V$MEIS1_01 M00419 R 12 0.8000 0.770 0.616 .hrACTGTSACmw.. SHYCTGTCAYDR

V$MEIS1BHOXA9_02 M00421 R 10 0.5263 0.819 0.431 ghrACTGTSA..... ....WAAASTGTCA

Total maches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 198 (19.80%)
Max nb of predicted sites per peak: 3
(mm9_chr8_122817058_122818100_+)
Mean nb of predicted sites per peak: 1.14

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 oligos_7nt_vs_ctrl_m4

rsasAGATAASAra

TYTSTTATCTSTSY

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rsasAGATAASAra

Gata1 MA0035.2 D 11 0.7857 0.930 0.731 ..asAGATAASAr. rsWGATAAgrr

Tal1::Gata1 MA0140.1 D 11 0.5238 0.942 0.494 rsasAGATAAS... .......ggrswGATAAg

Evi1 MA0029.1 D 11 0.6471 0.795 0.514 ...sAGATAASAra aAGAyAAGATA...

Total maches= 3

[ match table: html text ]
[ alignments (logos): html text ]

jaspar_pbm_mouse

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rsasAGATAASAra

Gata3_1 PB0021.1 D 14 0.6364 0.937 0.596 rsasAGATAASAra ...dwakAGATAAGArw.....

Gata6_1 PB0023.1 D 14 0.8235 0.888 0.732 rsasAGATAASAra .awmkwGATAAGart..

Gata5_1 PB0022.1 D 14 0.8235 0.814 0.671 rsasAGATAASAra .wwrcTGATAAGrrg..

Total maches= 3

[ match table: html text ]
[ alignments (logos): html text ]

custom_motif_collection

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rsasAGATAASAra

V$GATA2_03 M00349 D 10 0.7143 0.933 0.666 ..asAGATAASA.. asaGATAagA

V$GATA2_02 M00348 D 10 0.7143 0.930 0.665 ..asAGATAASA.. agwGATAAsa

V$GATA1_06 M00347 D 10 0.7143 0.915 0.653 ..asAGATAASA.. myAGATAAsr

Total maches= 19 (16 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 237 (23.70%)
Max nb of predicted sites per peak: 4
(mm9_chr1_187295885_187297742_+)
Mean nb of predicted sites per peak: 1.15

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 oligos_7nt_vs_ctrl_m5

gsTGAsTCAsc

GSTGASTCASC

[ matrix: tab format transfac format ]

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gsTGAsTCAsc

AP1 MA0099.2 D 7 0.6364 0.947 0.603 ..TGAsTCA.. TGAmTCA

NFE2L1::MafG MA0089.1 R 6 0.5455 0.837 0.457 .....sTCAsc GTCATS

Total maches= 2

[ match table: html text ]
[ alignments (logos): html text ]

jaspar_pbm_mouse

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gsTGAsTCAsc

Jundm2_2 PB0142.1 R 11 0.6875 0.926 0.637 gsTGAsTCAsc ..KRTGASTCAYC...

Total maches= 1

[ match table: html text ]
[ alignments (logos): html text ]

custom_motif_collection

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gsTGAsTCAsc

V$AP1_C M00199 D 9 0.8182 0.968 0.792 .sTGAsTCAs. rTGAsTCAg

V$AP1_01 M00517 D 11 0.8462 0.933 0.790 gsTGAsTCAsc .vrTGAsTCAkc.

V$AP1_Q6 M00174 D 11 1.0000 0.903 0.903 gsTGAsTCAsc rvTGACTcaky

Total maches= 17 (14 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 172 (17.20%)
Max nb of predicted sites per peak: 12
(mm9_chr8_86715308_86716904_+)
Mean nb of predicted sites per peak: 2.34

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]
Discovered motifs versus transcription factor databases
Motifs versus jaspar_core_vertebrates database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]
Motifs versus jaspar_pbm_mouse database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]
Motifs versus custom_motif_collection database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSA-tools - peak-motifs result

Analysis: p300_heart_versus_limb_Blow2010 (02/07/2012 20:41)

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor syGrkGACAGtrd

Total maches= 0

jaspar_pbm_mouse

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor syGrkGACAGtrd

Total maches= 0

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor maGCACCCAsr

Total maches= 0

jaspar_pbm_mouse

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor maGCACCCAsr

Total maches= 0

jaspar_pbm_mouse

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wrAKGwCAsCwk

Rara_1 PB0053.1 D 12 0.7500 0.781 0.586 wrAKGwCAsCwk ....AAAGGTCAcstg

Total maches= 1

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ghrACTGTSACmwvy

Total maches= 0

jaspar_pbm_mouse

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ghrACTGTSACmwvy

Total maches= 0

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gsTGAsTCAsc

AP1 MA0099.2 D 7 0.6364 0.947 0.603 ..TGAsTCA.. TGAmTCA

NFE2L1::MafG MA0089.1 R 6 0.5455 0.837 0.457 .....sTCAsc GTCATS

Total maches= 2

jaspar_pbm_mouse

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gsTGAsTCAsc

Jundm2_2 PB0142.1 R 11 0.6875 0.926 0.637 gsTGAsTCAsc ..KRTGASTCAYC...

Total maches= 1

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

RSA-tools - peak-motifs result

Analysis: p300_heart_versus_limb_Blow2010 (02/07/2012 20:41)

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

jaspar_core_vertebrates name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor syGrkGACAGtrd Total maches= 0

jaspar_pbm_mouse name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor syGrkGACAGtrd Total maches= 0

jaspar_core_vertebrates name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor maGCACCCAsr Total maches= 0

jaspar_pbm_mouse name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor maGCACCCAsr Total maches= 0

jaspar_pbm_mouse name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor wrAKGwCAsCwk Rara_1 PB0053.1 D 12 0.7500 0.781 0.586 wrAKGwCAsCwk ....AAAGGTCAcstg Total maches= 1

jaspar_core_vertebrates name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor ghrACTGTSACmwvy Total maches= 0

jaspar_pbm_mouse name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor ghrACTGTSACmwvy Total maches= 0

jaspar_core_vertebrates name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor gsTGAsTCAsc AP1 MA0099.2 D 7 0.6364 0.947 0.603 ..TGAsTCA.. TGAmTCA NFE2L1::MafG MA0089.1 R 6 0.5455 0.837 0.457 .....sTCAsc GTCATS Total maches= 2

jaspar_pbm_mouse name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor gsTGAsTCAsc Jundm2_2 PB0142.1 R 11 0.6875 0.926 0.637 gsTGAsTCAsc ..KRTGASTCAYC... Total maches= 1

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor syGrkGACAGtrd

Total maches= 0

jaspar_pbm_mouse

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor syGrkGACAGtrd

Total maches= 0

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor maGCACCCAsr

Total maches= 0

jaspar_pbm_mouse

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor maGCACCCAsr

Total maches= 0

jaspar_pbm_mouse

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wrAKGwCAsCwk

Rara_1 PB0053.1 D 12 0.7500 0.781 0.586 wrAKGwCAsCwk ....AAAGGTCAcstg

Total maches= 1

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ghrACTGTSACmwvy

Total maches= 0

jaspar_pbm_mouse

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ghrACTGTSACmwvy

Total maches= 0

jaspar_core_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gsTGAsTCAsc

AP1 MA0099.2 D 7 0.6364 0.947 0.603 ..TGAsTCA.. TGAmTCA

NFE2L1::MafG MA0089.1 R 6 0.5455 0.837 0.457 .....sTCAsc GTCATS

Total maches= 2

jaspar_pbm_mouse

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gsTGAsTCAsc

Jundm2_2 PB0142.1 R 11 0.6875 0.926 0.637 gsTGAsTCAsc ..KRTGASTCAYC...

Total maches= 1