RSA-tools
- peak-motifs result
Analysis: p300_heart_versus_limb_Blow2010 (02/07/2012 20:41)
Input files
ctrl_seq
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/peak-motifscontrol_seq
motif_db_custom_motif_collection
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/peak-motifs_custom_motif_db.tf
motif_db_jaspar_core_vertebrates
/home/rsat/rsa-tools/public_html/data/motif_databases/JASPAR/jaspar_core_vertebrates_2009_10.tf
motif_db_jaspar_pbm_mouse
/home/rsat/rsa-tools/public_html/data/motif_databases/JASPAR/jaspar_pbm_mouse_2009_10.tf
test_seq
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/peak-motifspeak_seq
Directories
output
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/
oligos_6nt_vs_ctrl_m1
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/discovered_motifs/oligos_6nt_vs_ctrl_m1/
oligos_6nt_vs_ctrl_m2
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/discovered_motifs/oligos_6nt_vs_ctrl_m2/
oligos_6nt_vs_ctrl_m3
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/discovered_motifs/oligos_6nt_vs_ctrl_m3/
oligos_6nt_vs_ctrl_m4
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/discovered_motifs/oligos_6nt_vs_ctrl_m4/
oligos_6nt_vs_ctrl_m5
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/discovered_motifs/oligos_6nt_vs_ctrl_m5/
oligos_7nt_vs_ctrl_m1
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/discovered_motifs/oligos_7nt_vs_ctrl_m1/
oligos_7nt_vs_ctrl_m2
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/discovered_motifs/oligos_7nt_vs_ctrl_m2/
oligos_7nt_vs_ctrl_m3
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/discovered_motifs/oligos_7nt_vs_ctrl_m3/
oligos_7nt_vs_ctrl_m4
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/discovered_motifs/oligos_7nt_vs_ctrl_m4/
oligos_7nt_vs_ctrl_m5
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/discovered_motifs/oligos_7nt_vs_ctrl_m5/
Output files
1nt_ctrl_freq
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/composition/peak-motifs_ctrl_freq-1str-ovlp_1nt.tab
1nt_ctrl_heatmap
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/composition/peak-motifs_ctrl_heatmap-1str-ovlp_1nt.png
1nt_ctrl_inclusive
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/composition/peak-motifs_ctrl_inclusive-1str-ovlp_1nt.txt
1nt_ctrl_profiles
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_1nt_ci20.tab
1nt_ctrl_profiles_graph
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_1nt_ci20.png
1nt_ctrl_profiles_index
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_1nt_ci20_graph_index.html
1nt_ctrl_transitions
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/composition/peak-motifs_ctrl_transitions-1str-ovlp_1nt.tab
1nt_test_freq
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/composition/peak-motifs_test_freq-1str-ovlp_1nt.tab
1nt_test_heatmap
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/composition/peak-motifs_test_heatmap-1str-ovlp_1nt.png
1nt_test_inclusive
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/composition/peak-motifs_test_inclusive-1str-ovlp_1nt.txt
1nt_test_profiles
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab
1nt_test_profiles_graph
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.png
1nt_test_profiles_index
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20_graph_index.html
1nt_test_transitions
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/composition/peak-motifs_test_transitions-1str-ovlp_1nt.tab
2nt_ctrl_freq
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/composition/peak-motifs_ctrl_freq-1str-ovlp_2nt.tab
2nt_ctrl_heatmap
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/composition/peak-motifs_ctrl_heatmap-1str-ovlp_2nt.png
2nt_ctrl_inclusive
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/composition/peak-motifs_ctrl_inclusive-1str-ovlp_2nt.txt
2nt_ctrl_profiles
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_2nt_ci20.tab
2nt_ctrl_profiles_graph
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_2nt_ci20.png
2nt_ctrl_profiles_index
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_2nt_ci20_graph_index.html
2nt_ctrl_transitions
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/composition/peak-motifs_ctrl_transitions-1str-ovlp_2nt.tab
2nt_test_freq
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/composition/peak-motifs_test_freq-1str-ovlp_2nt.tab
2nt_test_heatmap
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/composition/peak-motifs_test_heatmap-1str-ovlp_2nt.png
2nt_test_inclusive
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
2nt_test_profiles
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
2nt_test_profiles_graph
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.png
2nt_test_profiles_index
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20_graph_index.html
2nt_test_transitions
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/composition/peak-motifs_test_transitions-1str-ovlp_2nt.tab
archive
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/peak-motifs_archive.zip
ctrl_converted
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/data/sequences/peak-motifs_ctrl.fasta
ctrl_purged
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/data/sequences/peak-motifs_ctrl_purged_ml30_mis0.fasta
ctrl_seqlen
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/data/sequences/peak-motifs_ctrl_seqlen.tab
ctrl_seqlen_distrib
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/data/sequences/peak-motifs_ctrl_seqlen_distrib.tab
ctrl_seqlen_distrib_graph
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/data/sequences/peak-motifs_ctrl_seqlen_distrib.png
links
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/reports/peak-motifs_links.html
log
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/reports/peak-motifs_log.txt
merged_sites
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/sites/peak-motifs_all_motifs_seqcoord.tab
merged_sites_bed
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/sites/peak-motifs_all_motifs_seqcoord.bed
merged_words
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/merged_words/peak-motifs_merged_words.tab
merged_words_heatmap
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/merged_words/peak-motifs_merged_words_heatmap.png
merged_words_html
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/merged_words/peak-motifs_merged_words.html
motifs_disco_compa
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
motifs_disco_compa_alignments_1ton
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
motifs_disco_compa_alignments_1ton_html
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
motifs_disco_compa_gml
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/discovered_motifs/peak-motifs_motifs_disco_compa.gml
motifs_disco_compa_html
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
motifs_discovered
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/discovered_motifs/peak-motifs_motifs_discovered.tf
motifs_discovered_table
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/discovered_motifs/peak-motifs_motifs_discovered_table.tab
motifs_vs_db_custom_motif_collection
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/discovered_vs_db/peak-motifs_motifs_vs_db_custom_motif_collection.tab
motifs_vs_db_custom_motif_collection_alignments_1ton
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/discovered_vs_db/peak-motifs_motifs_vs_db_custom_motif_collection_alignments_1ton.tab
motifs_vs_db_custom_motif_collection_alignments_1ton_html
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/discovered_vs_db/peak-motifs_motifs_vs_db_custom_motif_collection_alignments_1ton.html
motifs_vs_db_custom_motif_collection_gml
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/discovered_vs_db/peak-motifs_motifs_vs_db_custom_motif_collection.gml
motifs_vs_db_custom_motif_collection_html
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/discovered_vs_db/peak-motifs_motifs_vs_db_custom_motif_collection.html
motifs_vs_db_jaspar_core_vertebrates
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/discovered_vs_db/peak-motifs_motifs_vs_db_jaspar_core_vertebrates.tab
motifs_vs_db_jaspar_core_vertebrates_alignments_1ton
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/discovered_vs_db/peak-motifs_motifs_vs_db_jaspar_core_vertebrates_alignments_1ton.tab
motifs_vs_db_jaspar_core_vertebrates_alignments_1ton_html
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/discovered_vs_db/peak-motifs_motifs_vs_db_jaspar_core_vertebrates_alignments_1ton.html
motifs_vs_db_jaspar_core_vertebrates_gml
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/discovered_vs_db/peak-motifs_motifs_vs_db_jaspar_core_vertebrates.gml
motifs_vs_db_jaspar_core_vertebrates_html
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/discovered_vs_db/peak-motifs_motifs_vs_db_jaspar_core_vertebrates.html
motifs_vs_db_jaspar_pbm_mouse
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/discovered_vs_db/peak-motifs_motifs_vs_db_jaspar_pbm_mouse.tab
motifs_vs_db_jaspar_pbm_mouse_alignments_1ton
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/discovered_vs_db/peak-motifs_motifs_vs_db_jaspar_pbm_mouse_alignments_1ton.tab
motifs_vs_db_jaspar_pbm_mouse_alignments_1ton_html
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/discovered_vs_db/peak-motifs_motifs_vs_db_jaspar_pbm_mouse_alignments_1ton.html
motifs_vs_db_jaspar_pbm_mouse_gml
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/discovered_vs_db/peak-motifs_motifs_vs_db_jaspar_pbm_mouse.gml
motifs_vs_db_jaspar_pbm_mouse_html
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/discovered_vs_db/peak-motifs_motifs_vs_db_jaspar_pbm_mouse.html
oligos_6nt_vs_ctrl
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/oligos_6nt_vs_ctrl/peak-motifs_oligos-2str-noov_6nt_vs_ctrl.tab
oligos_6nt_vs_ctrl_2pssm
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/oligos_6nt_vs_ctrl/peak-motifs_oligos-2str-noov_6nt_vs_ctrl_pssm_log.txt
oligos_6nt_vs_ctrl_asmb
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/oligos_6nt_vs_ctrl/peak-motifs_oligos-2str-noov_6nt_vs_ctrl_pssm.asmb
oligos_6nt_vs_ctrl_bg_file
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/oligos_6nt_vs_ctrl/peak-motifs_oligos_bg_from_ctrl_6nt-2str-noov.tab
oligos_6nt_vs_ctrl_m1_logo
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/discovered_motifs/oligos_6nt_vs_ctrl_m1/peak-motifs_oligos_6nt_vs_ctrl_m1_logo.png
oligos_6nt_vs_ctrl_m1_logo_rc
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/discovered_motifs/oligos_6nt_vs_ctrl_m1/peak-motifs_oligos_6nt_vs_ctrl_m1_logo_rc.png
oligos_6nt_vs_ctrl_m1_pssm_enrichment
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/discovered_motifs/oligos_6nt_vs_ctrl_m1/peak-motifs_oligos_6nt_vs_ctrl_m1_scan_mkv2_enrichment.tab
oligos_6nt_vs_ctrl_m1_pssm_enrichment_png
/home/rsat/rsa-tools/public_html/tmp/2012/07/02/peak-motifs.2012-07-02.203241_2012-07-02.203241_GH0tGg/results/discovered_motifs/oligos_6nt_vs_ctrl_m1/peak-motifs_oligos_6nt_vs_ctrl_m1_scan_mkv2_enrichment.png
oligos_6nt_vs_ctrl_m1_pssm_site_distrib
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oligos_7nt_vs_ctrl_pssm_sig
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test_seq_coord
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test_seqlen
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test_seqlen_distrib
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timelog
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timelog_html
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timetable
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