NeAT - KEGG network provider

Obtain organism-specific KEGG networks from KEGG PATHWAY version 55.0. Click on help for help.
Web service and interface by Karoline Faust.

1. Input help


Comment on the demonstration example

To demonstrate the KEGG network provider, we are constructing the metabolic network from two yeast species:
spo (Schizosaccharomyces pombe) and sce (Saccharomyces cerevisiae).
Enter full species names as given in KEGG or KEGG abbreviations for organisms, separated by '/' in text field below.
Example 1: eco/ecp/ecs
Example 2: Aspergillus flavus/Aspergillus niger/afm
Example 3: reference
Click here for the full list of KEGG organism names and abbreviations
AND/OR
Upload a file which contains one organism KEGG identifier by line:

AND/OR
Enter KEGG reaction identifiers, separated by '/' in text field below (e.g. R00015/R00551):
AND/OR
Upload a file which contains one reaction KEGG identifier by line:


2. Options help




Optional: KEGG identifiers of compounds to exclude (separated by '/')
Optional: KEGG identifiers of reactions to exclude (separated by '/')
Optional: RPAIR classes to exclude (separated by '/')


Directed network
RPAIR network   
For the conversion of reactions into reactant pairs, a file assembled from KEGG LIGAND is used, which is available here.
Reaction treatment:
    all reactions reversible                                                           
    keep irreversible reactions (only possible in directed networks!)

Optional: The network is constructed with some default attributes. You can add more attributes by selecting them from the menus below, but be aware that this will slow down the network construction. Note also that you can select more than one additional attribute by pushing the Shift key.
Compound attributes
    Reaction/RPAIR attributes



4. Output help



Network format  


Email (optional)

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