RSAT : matrix-quality result

4296 organisms

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Genomes and genes

supported organisms gene information infer operons get orthologs random gene selection

Sequence tools

purge sequence convert sequences random sequences

Matrix tools

retrieve matrix

convert matrix compare matrices matrix-clustering

matrix distrib matrix quality

Build control sets

random gene selection random sequences random genome fragments random-motif permute-matrix random-sites implant-sites

Motif discovery

strings oligo-analysis (words) oligo-diff (words) dyad-analysis (spaced pairs) pattern assembly strings with positional biais position-analysis (words) local-word-analysis (word and spaced pairs) matrices info-gibbs

Pattern matching

matrices matrix-scan
(full options) matrix-scan (quick) crer-scan strings dna-pattern genome-scale dna-pattern

Comparative genomics

get orthologs get orthologs-compara

footprint-discovery footprint-scan

NGS - ChIP-seq

peak-motifs fetch-sequences from UCSC sequences from bed/gff/vcf

random genome fragments

Genetic variations (Var-tools)

Variation info

Convert variation formats

Conversion/Utilities

Set comparisons / enrichment Stats Frequency distribution sequences convert sequences matrices convert matrix / logo background models create background convert background sequence probability features convert features compare features

Drawing

feature map feature map 2 XY graph

SOAP Web services

Programmatic interface to RSAT WSDL Documentation

Help & Contact

RSAT team Training material Tutorials Publications Credits Download Motif databases Data

bug/dont understand