peak-motifs Oct4_Chen2008_sites_from

Motif discovery

Motif 1 oligos_6nt_mkv3_m1

k-mer sig=48.15; evalue=7.1e-49

yryattTGCATATGCAaatryr

YRYATTTGCATATGCAAATRYR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

jaspar_core_nonredundant_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yryattTGCATATGCAaatryr

POU2F2 MA0507.1 D 13 0.5909 0.896 0.529 NA NA

POU2F3 MA0627.2 D 13 0.5909 0.852 0.503 NA NA

Pou5f1::Sox2 MA0142.1 R 15 0.6818 0.715 0.488 NA NA

Total matches= 9 (6 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 268 (26.80%)
Max nb of predicted sites per peak: 14
(mm9_chr7_57241511_57241780_+)
Mean nb of predicted sites per peak: 2.71

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_mkv3_m2

k-mer sig=23.87; evalue=1.3e-24

ccCCCCaCCCCcc

GGGGGGTGGGGGG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

jaspar_core_nonredundant_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ccCCCCaCCCCcc

KLF4 MA0039.4 D 12 0.9231 0.956 0.883 NA NA

ZNF148 MA1653.1 D 12 0.9231 0.868 0.801 NA NA

ZNF740 MA0753.2 D 13 1.0000 0.771 0.771 NA NA

Total matches= 20 (17 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 253 (25.30%)
Max nb of predicted sites per peak: 25
(mm9_chr11_6289161_6289580_+)
Mean nb of predicted sites per peak: 2.42

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_mkv3_m3

k-mer sig=48.15; evalue=7.1e-49

yhcaTTTGCATaacAAwgsmm

KKSCWTTGTTATGCAAATGDR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

jaspar_core_nonredundant_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yhcaTTTGCATaacAAwgsmm

Pou5f1::Sox2 MA0142.1 R 15 0.7143 0.988 0.705 NA NA

POU2F2 MA0507.1 D 13 0.6190 0.946 0.586 NA NA

POU1F1 MA0784.1 R 14 0.6667 0.858 0.572 NA NA

Total matches= 13 (10 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 723 (72.30%)
Max nb of predicted sites per peak: 5
(mm9_chr16_97067031_97067600_+)
Mean nb of predicted sites per peak: 1.22

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_mkv3_m4

k-mer sig=12.94; evalue=1.1e-13

atTTACATAws

SWTATGTAAAT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

jaspar_core_nonredundant_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor atTTACATAws

POU2F1 MA0785.1 R 11 0.9167 0.824 0.755 NA NA

NFIL3 MA0025.2 R 11 0.8462 0.863 0.730 NA NA

TEF MA0843.1 D 11 0.9167 0.781 0.716 NA NA

Total matches= 34 (31 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 240 (24.00%)
Max nb of predicted sites per peak: 4
(mm9_chr8_15844801_15845180_+)
Mean nb of predicted sites per peak: 1.18

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_mkv3_m5

k-mer sig=14.70; evalue=2e-15

rmaAAACAAAGcma

TKGCTTTGTTTTKY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

jaspar_core_nonredundant_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rmaAAACAAAGcma

SOX10 MA0442.2 D 11 0.7857 0.915 0.719 NA NA

Sox3 MA0514.1 R 10 0.7143 0.894 0.638 NA NA

SOX4 MA0867.2 D 10 0.7143 0.880 0.628 NA NA

Total matches= 22 (19 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 202 (20.20%)
Max nb of predicted sites per peak: 10
(mm9_chr10_28355921_28356220_+)
Mean nb of predicted sites per peak: 1.45

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 positions_6nt_m1

k-mer sig=300; evalue=1e-300

ydyaywTGCATATGCAwatryayr

YRTRYATWTGCATATGCAWRTRHR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

jaspar_core_nonredundant_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ydyaywTGCATATGCAwatryayr

POU2F2 MA0507.1 R 13 0.5417 0.872 0.473 NA NA

POU2F3 MA0627.2 R 13 0.5417 0.829 0.449 NA NA

Pou5f1::Sox2 MA0142.1 R 15 0.6250 0.703 0.439 NA NA

Total matches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 293 (29.30%)
Max nb of predicted sites per peak: 15
(mm9_chr2_105210341_105210690_+)
Mean nb of predicted sites per peak: 2.60

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 positions_6nt_m2

k-mer sig=300; evalue=1e-300

trtaTGCATwTGCATawsaatrkr

YMYATTSWTATGCAWATGCATAYA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

jaspar_core_nonredundant_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor trtaTGCATwTGCATawsaatrkr

Pou5f1::Sox2 MA0142.1 R 15 0.6250 0.886 0.554 NA NA

POU2F2 MA0507.1 D 13 0.5417 0.868 0.470 NA NA

POU2F3 MA0627.2 R 13 0.5417 0.862 0.467 NA NA

Total matches= 8 (5 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 376 (37.60%)
Max nb of predicted sites per peak: 13
(mm9_chr16_97067031_97067600_+)
Mean nb of predicted sites per peak: 1.82

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 positions_6nt_m3

k-mer sig=300; evalue=1e-300

rywtaTGCATwTGCATAtgyryat

ATRYRCATATGCAWATGCATAWRY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

jaspar_core_nonredundant_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rywtaTGCATwTGCATAtgyryat

POU2F2 MA0507.1 D 13 0.5417 0.836 0.453 NA NA

POU2F3 MA0627.2 R 13 0.5417 0.819 0.444 NA NA

Pou5f1::Sox2 MA0142.1 R 15 0.6250 0.702 0.439 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 257 (25.70%)
Max nb of predicted sites per peak: 17
(mm9_chr2_105210341_105210690_+)
Mean nb of predicted sites per peak: 2.70

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 positions_6nt_m4

k-mer sig=300; evalue=1e-300

rydykyatgcAwATGCAtAtgcay

RTGCATATGCATWTGCATRMRHRY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

jaspar_core_nonredundant_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rydykyatgcAwATGCAtAtgcay

POU2F2 MA0507.1 R 13 0.5417 0.868 0.470 NA NA

Pou5f1::Sox2 MA0142.1 D 15 0.6250 0.743 0.464 NA NA

POU2F3 MA0627.2 D 13 0.5417 0.817 0.443 NA NA

Total matches= 3

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 316 (31.60%)
Max nb of predicted sites per peak: 16
(mm9_chr2_105210341_105210690_+)
Mean nb of predicted sites per peak: 2.46

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 positions_6nt_m5

k-mer sig=9.00; evalue=1e-09

waACAAAGgmm

KKCCTTTGTTW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

jaspar_core_nonredundant_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor waACAAAGgmm

SOX4 MA0867.2 D 10 0.9091 0.941 0.855 NA NA

SOX10 MA0442.2 D 10 0.8333 0.971 0.809 NA NA

SOX2 MA0143.4 D 11 1.0000 0.807 0.807 NA NA

Total matches= 18 (15 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 200 (20.00%)
Max nb of predicted sites per peak: 2
(mm9_chr9_118517791_118518180_+)
Mean nb of predicted sites per peak: 1.16

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_7nt_mkv4_m1

k-mer sig=52.85; evalue=1.4e-53

tsatATGCAaATghry

RYDCATTTGCATATSA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

jaspar_core_nonredundant_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor tsatATGCAaATghry

POU2F2 MA0507.1 R 13 0.8125 0.981 0.797 NA NA

POU2F3 MA0627.2 D 13 0.8125 0.968 0.787 NA NA

POU1F1 MA0784.1 D 14 0.8750 0.885 0.775 NA NA

Total matches= 11 (8 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 493 (49.30%)
Max nb of predicted sites per peak: 7
(mm9_chr2_105210341_105210690_+)
Mean nb of predicted sites per peak: 1.53

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_7nt_mkv4_m2

k-mer sig=52.85; evalue=1.4e-53

cyycaTTTGCATaAcAAwrs

SYWTTGTTATGCAAATGRRG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

jaspar_core_nonredundant_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cyycaTTTGCATaAcAAwrs

Pou5f1::Sox2 MA0142.1 R 15 0.7500 0.986 0.739 NA NA

POU2F2 MA0507.1 D 13 0.6500 0.949 0.617 NA NA

POU1F1 MA0784.1 R 14 0.7000 0.856 0.599 NA NA

Total matches= 13 (10 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 709 (70.90%)
Max nb of predicted sites per peak: 6
(mm9_chr3_121848111_121848740_+)
Mean nb of predicted sites per peak: 1.23

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 oligos_7nt_mkv4_m3

k-mer sig=25.17; evalue=6.8e-26

wtATGCwAATgw

WCATTWGCATAW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

jaspar_core_nonredundant_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wtATGCwAATgw

POU3F2 MA0787.1 D 12 1.0000 0.935 0.935 NA NA

POU3F1 MA0786.1 D 12 1.0000 0.933 0.933 NA NA

POU3F3 MA0788.1 D 12 0.9231 0.926 0.854 NA NA

Total matches= 77 (74 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 384 (38.40%)
Max nb of predicted sites per peak: 5
(mm9_chr7_57241511_57241780_+)
Mean nb of predicted sites per peak: 1.27

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 oligos_7nt_mkv4_m4

k-mer sig=24.45; evalue=3.5e-25

ttTGCATrACAAwrg

CYWTTGTYATGCAAA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

jaspar_core_nonredundant_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ttTGCATrACAAwrg

Pou5f1::Sox2 MA0142.1 R 14 0.8750 0.948 0.829 NA NA

SOX15 MA1152.1 R 10 0.6667 0.805 0.537 NA NA

Sox6 MA0515.1 R 10 0.6667 0.766 0.511 NA NA

Total matches= 21 (18 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 620 (62.00%)
Max nb of predicted sites per peak: 6
(mm9_chr3_121848111_121848740_+)
Mean nb of predicted sites per peak: 1.14

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 oligos_7nt_mkv4_m5

k-mer sig=11.61; evalue=2.5e-12

ccCCCCCaCCCCccc

GGGGGGGTGGGGGGG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

jaspar_core_nonredundant_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ccCCCCCaCCCCccc

KLF4 MA0039.4 D 12 0.8000 0.901 0.721 NA NA

ZNF148 MA1653.1 D 12 0.8000 0.865 0.692 NA NA

ZNF740 MA0753.2 D 13 0.8667 0.776 0.673 NA NA

Total matches= 17 (14 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 239 (23.90%)
Max nb of predicted sites per peak: 44
(mm9_chr11_6289161_6289580_+)
Mean nb of predicted sites per peak: 3.84

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 16 positions_7nt_m1

k-mer sig=54.44; evalue=3.6e-55

kbcywTTGTtATGCAaAtgvrrky

RMYYBCATTTGCATAACAAWRGVM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

jaspar_core_nonredundant_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kbcywTTGTtATGCAaAtgvrrky

Pou5f1::Sox2 MA0142.1 D 15 0.6250 0.990 0.618 NA NA

POU2F2 MA0507.1 R 13 0.5417 0.942 0.510 NA NA

POU2F3 MA0627.2 D 13 0.5417 0.909 0.492 NA NA

Total matches= 11 (8 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 694 (69.40%)
Max nb of predicted sites per peak: 6
(mm9_chr3_121848111_121848740_+)
Mean nb of predicted sites per peak: 1.21

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 17 positions_7nt_m2

k-mer sig=54.44; evalue=3.6e-55

yryaTtTGCATATGCAaAtryayr

YRTRYATTTGCATATGCAAATRYR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

jaspar_core_nonredundant_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yryaTtTGCATATGCAaAtryayr

POU2F2 MA0507.1 D 13 0.5417 0.917 0.496 NA NA

POU2F3 MA0627.2 R 13 0.5417 0.863 0.467 NA NA

Pou5f1::Sox2 MA0142.1 R 15 0.6250 0.725 0.453 NA NA

Total matches= 8 (5 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 256 (25.60%)
Max nb of predicted sites per peak: 15
(mm9_chr2_105210341_105210690_+)
Mean nb of predicted sites per peak: 2.62

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 18 positions_7nt_m3

k-mer sig=42.32; evalue=4.8e-43

kbcwTTgtTaTGCAtAacAAwgvm

KBCWTTGTTATGCATAACAAWGVM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

jaspar_core_nonredundant_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kbcwTTgtTaTGCAtAacAAwgvm

Pou5f1::Sox2 MA0142.1 D 15 0.6250 0.852 0.533 NA NA

Total matches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 249 (24.90%)
Max nb of predicted sites per peak: 4
(mm9_chr8_106617241_106617680_+)
Mean nb of predicted sites per peak: 2.10

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 19 positions_7nt_m4

k-mer sig=54.44; evalue=3.6e-55

cywTTgtyATGCAAATgcarry

RYYTGCATTTGCATRACAAWRG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

jaspar_core_nonredundant_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cywTTgtyATGCAAATgcarry

Pou5f1::Sox2 MA0142.1 D 15 0.6818 0.969 0.661 NA NA

POU2F2 MA0507.1 R 13 0.5909 0.951 0.562 NA NA

POU2F3 MA0627.2 D 13 0.5909 0.908 0.536 NA NA

Total matches= 9 (6 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 653 (65.30%)
Max nb of predicted sites per peak: 7
(mm9_chr3_121848111_121848740_+)
Mean nb of predicted sites per peak: 1.30

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 20 positions_7nt_m5

k-mer sig=54.44; evalue=3.6e-55

gbrtatgygCATATGCAaATryry

RYRYATTTGCATATGCRCATAYVC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

jaspar_core_nonredundant_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gbrtatgygCATATGCAaATryry

POU2F2 MA0507.1 R 13 0.5417 0.914 0.495 NA NA

POU2F3 MA0627.2 D 13 0.5417 0.881 0.477 NA NA

POU1F1 MA0784.1 D 14 0.5833 0.785 0.458 NA NA

Total matches= 7 (4 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 233 (23.30%)
Max nb of predicted sites per peak: 20
(mm9_chr7_57241511_57241780_+)
Mean nb of predicted sites per peak: 2.96

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]
Discovered motifs versus transcription factor databases
Motifs versus jaspar_core_nonredundant_vertebrates database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: Oct4_Chen2008_sites_from_Jaspar (16/02/2021 15:11)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

jaspar_core_nonredundant_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kbcwTTgtTaTGCAtAacAAwgvm

Pou5f1::Sox2 MA0142.1 D 15 0.6250 0.852 0.533 NA NA

Total matches= 1

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

RSAT - peak-motifs result

Analysis: Oct4_Chen2008_sites_from_Jaspar (16/02/2021 15:11)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

jaspar_core_nonredundant_vertebrates name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor kbcwTTgtTaTGCAtAacAAwgvm Pou5f1::Sox2 MA0142.1 D 15 0.6250 0.852 0.533 NA NA Total matches= 1

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

jaspar_core_nonredundant_vertebrates

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kbcwTTgtTaTGCAtAacAAwgvm

Pou5f1::Sox2 MA0142.1 D 15 0.6250 0.852 0.533 NA NA

Total matches= 1