ReMap 2018 v1.2

An integrative ChIP-seq analysis of regulatory regions

AFF4

Function : AF4/FMR2 family member 4
Description : The protein encoded by this gene belongs to the AF4 family of transcription factors involved in leukemia. It is a component of the positive transcription elongation factor b (P-TEFb) complex. A chromosomal translocation involving this gene and MLL gene on chromosome 11 is found in infant acute lymphoblastic leukemia with ins(5;11)(q31;q31q23). [provided by RefSeq, Oct 2011]

Classification  

Super Class Unknown
Class Unknown
Family Unknown
Sub Family Unknown

External references

Ensembl ENSG00000072364
RefSeq NP_055238
Uniprot Q9UHB7
Aliases AF5Q31, CHOPS, MCEF
UCSC Gene coordinates chr5:132875378-132963661

External Links

JASPAR AFF4
Wikipedia AFF4
WikiGenes AFF4
Transcription Factor Encylopedia AFF4    
GeneCards AFF4
FactorBook AFF4


Genomic visualization & Analyses for MACS

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for MACS

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

MACS - Datasets retained for AFF4

MACS - Datasets excluded for AFF4

Genomic visualization & Analyses for JAMM

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for JAMM

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

JAMM - Datasets retained for AFF4