ReMap 2018 v1.2

An integrative ChIP-seq analysis of regulatory regions

ARID1B

Function : AT-rich interaction domain 1B
Description : This locus encodes an AT-rich DNA interacting domain-containing protein. The encoded protein is a component of the SWI/SNF chromatin remodeling complex and may play a role in cell-cycle activation. The protein encoded by this locus is similar to AT-rich interactive domain-containing protein 1A. These two proteins function as alternative, mutually exclusive ARID-subunits of the SWI/SNF complex. The associated complexes play opposing roles. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Oct 2016]

Classification  

Super Class Helix-turn-helix domains
Class ARID domain factors
Family ARID-related factors
Sub Family ARID1

External references

Ensembl ENSG00000049618
RefSeq NP_065783
Uniprot Q8NFD5
Aliases 6A3-5, BAF250B, BRIGHT, CSS1, DAN15, ELD/OSA1, MRD12, OSA2, P250R
UCSC Gene coordinates chr6:156777846-157210778

External Links

JASPAR ARID1B
Wikipedia ARID1B
WikiGenes ARID1B
Transcription Factor Encylopedia ARID1B    
GeneCards ARID1B
FactorBook ARID1B


Genomic visualization & Analyses for MACS

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for MACS

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

MACS - Datasets retained for ARID1B

Genomic visualization & Analyses for JAMM

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for JAMM

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

JAMM - Datasets retained for ARID1B