ReMap 2018 v1.2

An integrative ChIP-seq analysis of regulatory regions

ARID2

Function : AT-rich interaction domain 2
Description : This gene encodes a member of the AT-rich interactive domain (ARID)-containing family of DNA-binding proteins. Members of the ARID family have roles in embryonic patterning, cell lineage gene regulation, cell cycle control, transcriptional regulation and chromatin structure modification. This protein functions as a subunit of the polybromo- and BRG1-associated factor or PBAF (SWI/SNF-B) chromatin remodeling complex which facilitates ligand-dependent transcriptional activation by nuclear receptors. Mutations in this gene are associated with hepatocellular carcinomas. A pseudogene of this gene is found on chromosome1. [provided by RefSeq, Dec 2016]

Classification  

Super Class Helix-turn-helix domains
Class ARID domain factors
Family ARID-related factors
Sub Family ARID2

External references

Ensembl ENSG00000189079
RefSeq NP_001334768
Uniprot Q68CP9
Aliases BAF200, p200
UCSC Gene coordinates chr12:45729682-45908036

External Links

JASPAR ARID2
Wikipedia ARID2
WikiGenes ARID2
Transcription Factor Encylopedia ARID2    
GeneCards ARID2
FactorBook ARID2


Genomic visualization & Analyses for MACS

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for MACS

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

MACS - Datasets retained for ARID2

Genomic visualization & Analyses for JAMM

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for JAMM

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

JAMM - Datasets retained for ARID2