ReMap 2018 v1.2

An integrative ChIP-seq analysis of regulatory regions

ARNT

Function : aryl hydrocarbon receptor nuclear translocator
Description : This gene encodes a protein containing a basic helix-loop-helix domain and two characteristic PAS domains along with a PAC domain. The encoded protein binds to ligand-bound aryl hydrocarbon receptor and aids in the movement of this complex to the nucleus, where it promotes the expression of genes involved in xenobiotic metabolism. This protein is also a co-factor for transcriptional regulation by hypoxia-inducible factor 1. Chromosomal translocation of this locus with the ETV6 (ets variant 6) gene on chromosome 12 have been described in leukemias. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Oct 2013]

Classification  

Super Class Basic domains
Class Basic helix-loop-helix factors (bHLH)
Family PAS domain factors
Sub Family Arnt-like factors

External references

Ensembl ENSG00000143437
RefSeq NP_001337154
Uniprot P27540
Aliases HIF-1-beta, HIF-1beta, HIF1-beta, HIF1B, HIF1BETA, TANGO, bHLHe2
UCSC Gene coordinates chr1:150809704-150876767

External Links

JASPAR MA0004.1
Wikipedia ARNT
WikiGenes ARNT
Transcription Factor Encylopedia ARNT
GeneCards ARNT
FactorBook ARNT


Genomic visualization & Analyses for MACS

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for MACS

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

MACS - Datasets retained for ARNT

MACS - Datasets excluded for ARNT

Genomic visualization & Analyses for JAMM

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for JAMM

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

JAMM - Datasets retained for ARNT