ReMap 2018 v1.2

An integrative ChIP-seq analysis of regulatory regions

ARNTL

Function : aryl hydrocarbon receptor nuclear translocator like
Description : The protein encoded by this gene is a basic helix-loop-helix protein that forms a heterodimer with CLOCK. This heterodimer binds E-box enhancer elements upstream of Period (PER1, PER2, PER3) and Cryptochrome (CRY1, CRY2) genes and activates transcription of these genes. PER and CRY proteins heterodimerize and repress their own transcription by interacting in a feedback loop with CLOCK/ARNTL complexes. Defects in this gene have been linked to infertility, problems with gluconeogenesis and lipogenesis, and altered sleep patterns. Several transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2014]

Classification  

Super Class Basic domains
Class Basic helix-loop-helix factors (bHLH)
Family PAS domain factors
Sub Family Arnt-like factors

External references

Ensembl ENSG00000133794
RefSeq NP_001338748
Uniprot O00327
Aliases BMAL1, BMAL1c, JAP3, MOP3, PASD3, TIC, bHLHe5
UCSC Gene coordinates chr11:13276612-13387267

External Links

JASPAR MA0603.1
Wikipedia ARNTL
WikiGenes ARNTL
Transcription Factor Encylopedia ARNTL
GeneCards ARNTL
FactorBook ARNTL


Genomic visualization & Analyses for MACS

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for MACS

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

MACS - Datasets retained for ARNTL

MACS - Datasets excluded for ARNTL

Genomic visualization & Analyses for JAMM

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for JAMM

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

JAMM - Datasets retained for ARNTL