ReMap 2018 v1.2

An integrative ChIP-seq analysis of regulatory regions

CDX2

Function : caudal type homeobox 2
Description : This gene is a member of the caudal-related homeobox transcription factor gene family. The encoded protein is a major regulator of intestine-specific genes involved in cell growth an differentiation. This protein also plays a role in early embryonic development of the intestinal tract. Aberrant expression of this gene is associated with intestinal inflammation and tumorigenesis. [provided by RefSeq, Jan 2012]

Classification  

Super Class Helix-turn-helix domains
Class Homeo domain factors
Family HOX-related factors
Sub Family CDX (Caudal type homeobox)

External references

Ensembl ENSG00000165556
RefSeq NP_001256
Uniprot Q99626
Aliases CDX-3, CDX2/AS, CDX3
UCSC Gene coordinates chr13:27960917-27969367

External Links

JASPAR MA0465.1
Wikipedia CDX2
WikiGenes CDX2
Transcription Factor Encylopedia CDX2
GeneCards CDX2
FactorBook CDX2


Genomic visualization & Analyses for MACS

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for MACS

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

MACS - Datasets retained for CDX2

Genomic visualization & Analyses for JAMM

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for JAMM

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

JAMM - Datasets retained for CDX2