ReMap 2018 v1.2

An integrative ChIP-seq analysis of regulatory regions

CHD4

Function : chromodomain helicase DNA binding protein 4
Description : The product of this gene belongs to the SNF2/RAD54 helicase family. It represents the main component of the nucleosome remodeling and deacetylase complex and plays an important role in epigenetic transcriptional repression. Patients with dermatomyositis develop antibodies against this protein. Somatic mutations in this gene are associated with serous endometrial tumors. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jul 2014]

Classification  

Super Class Unknown
Class Unknown
Family Unknown
Sub Family Unknown

External references

Ensembl ENSG00000111642
RefSeq NP_001284482
Uniprot Q14839
Aliases CHD-4, Mi-2b, Mi2-BETA, SIHIWES
UCSC Gene coordinates chr12:6570081-6607438

External Links

JASPAR CHD4
Wikipedia CHD4
WikiGenes CHD4
Transcription Factor Encylopedia CHD4    
GeneCards CHD4
FactorBook CHD4


Genomic visualization & Analyses for MACS

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for MACS

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

MACS - Datasets retained for CHD4

MACS - Datasets excluded for CHD4

Genomic visualization & Analyses for JAMM

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for JAMM

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

JAMM - Datasets retained for CHD4