ReMap 2018 v1.2

An integrative ChIP-seq analysis of regulatory regions

CHD8

Function : chromodomain helicase DNA binding protein 8
Description : This gene encodes a member of the chromodomain-helicase-DNA binding protein family, which is characterized by a SNF2-like domain and two chromatin organization modifier domains. The encoded protein also contains brahma and kismet domains, which are common to the subfamily of chromodomain-helicase-DNA binding proteins to which this protein belongs. This gene has been shown to function in several processes that include transcriptional regulation, epigenetic remodeling, promotion of cell proliferation, and regulation of RNA synthesis. Allelic variants of this gene are associated with autism spectrum disorder. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Dec 2016]

Classification  

Super Class Unknown
Class Unknown
Family Unknown
Sub Family Unknown

External references

Ensembl ENSG00000100888
RefSeq NP_065971
Uniprot Q9HCK8
Aliases AUTS18, HELSNF1
UCSC Gene coordinates chr14:21385193-21437297

External Links

JASPAR CHD8
Wikipedia CHD8
WikiGenes CHD8
Transcription Factor Encylopedia CHD8    
GeneCards CHD8
FactorBook CHD8


Genomic visualization & Analyses for MACS

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for MACS

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

MACS - Datasets retained for CHD8

MACS - Datasets excluded for CHD8

Genomic visualization & Analyses for JAMM

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for JAMM

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

JAMM - Datasets retained for CHD8