ReMap 2018 v1.2

An integrative ChIP-seq analysis of regulatory regions

CTCFL

Function : CCCTC-binding factor like
Description : CCCTC-binding factor (CTCF), an 11-zinc-finger factor involved in gene regulation, utilizes different zinc fingers to bind varying DNA target sites. CTCF forms methylation-sensitive insulators that regulate X-chromosome inactivation. This gene is a paralog of CTCF and appears to be expressed primarily in the cytoplasm of spermatocytes, unlike CTCF which is expressed primarily in the nucleus of somatic cells. CTCF and the protein encoded by this gene are normally expressed in a mutually exclusive pattern that correlates with resetting of methylation marks during male germ cell differentiation. Multiple alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jun 2012]

Classification  

Super Class Zinc-coordinating DNA-binding domains
Class C2H2 zinc finger factors
Family More than 3 adjacent zinc finger factors
Sub Family CTCF-like factors

External references

Ensembl ENSG00000124092
RefSeq NP_001255972
Uniprot Q8NI51
Aliases BORIS, CT27, CTCF-T, HMGB1L1, dJ579F20.2
UCSC Gene coordinates chr20:57495964-57525651

External Links

JASPAR MA1102.1
Wikipedia CTCFL
WikiGenes CTCFL
Transcription Factor Encylopedia CTCFL    
GeneCards CTCFL
FactorBook CTCFL


Genomic visualization & Analyses for MACS

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for MACS

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

MACS - Datasets retained for CTCFL

Genomic visualization & Analyses for JAMM

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for JAMM

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

JAMM - Datasets retained for CTCFL