ReMap 2018 v1.2

An integrative ChIP-seq analysis of regulatory regions

FOXA1

Function : forkhead box A1
Description : This gene encodes a member of the forkhead class of DNA-binding proteins. These hepatocyte nuclear factors are transcriptional activators for liver-specific transcripts such as albumin and transthyretin, and they also interact with chromatin. Similar family members in mice have roles in the regulation of metabolism and in the differentiation of the pancreas and liver. [provided by RefSeq, Jul 2008]

Classification  

Super Class Helix-turn-helix domains
Class Fork head / winged helix factors
Family Forkhead box (FOX) factors
Sub Family FOXA

External references

Ensembl ENSG00000129514
RefSeq NP_004487
Uniprot P55317
Aliases HNF3A, TCF3A
UCSC Gene coordinates chr14:37589551-37595119

External Links

JASPAR MA0148.3
Wikipedia FOXA1
WikiGenes FOXA1
Transcription Factor Encylopedia FOXA1
GeneCards FOXA1
FactorBook FOXA1


Genomic visualization & Analyses for MACS

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for MACS

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

MACS - Datasets retained for FOXA1

MACS - Datasets excluded for FOXA1

Genomic visualization & Analyses for JAMM

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for JAMM

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

JAMM - Datasets retained for FOXA1