ReMap 2018 v1.2

An integrative ChIP-seq analysis of regulatory regions

FOXA2

Function : forkhead box A2
Description : This gene encodes a member of the forkhead class of DNA-binding proteins. These hepatocyte nuclear factors are transcriptional activators for liver-specific genes such as albumin and transthyretin, and they also interact with chromatin. Similar family members in mice have roles in the regulation of metabolism and in the differentiation of the pancreas and liver. This gene has been linked to sporadic cases of maturity-onset diabetes of the young. Transcript variants encoding different isoforms have been identified for this gene. [provided by RefSeq, Oct 2008]

Classification  

Super Class Helix-turn-helix domains
Class Fork head / winged helix factors
Family Forkhead box (FOX) factors
Sub Family FOXA

External references

Ensembl ENSG00000125798
RefSeq NP_068556
Uniprot Q9Y261
Aliases HNF3B, TCF3B
UCSC Gene coordinates chr20:22581003-22585462

External Links

JASPAR MA0047.2
Wikipedia FOXA2
WikiGenes FOXA2
Transcription Factor Encylopedia FOXA2
GeneCards FOXA2
FactorBook FOXA2


Genomic visualization & Analyses for MACS

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for MACS

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

MACS - Datasets retained for FOXA2

MACS - Datasets excluded for FOXA2

Genomic visualization & Analyses for JAMM

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for JAMM

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

JAMM - Datasets retained for FOXA2