ReMap 2018 v1.2

An integrative ChIP-seq analysis of regulatory regions

GABPA

Function : GA binding protein transcription factor alpha subunit
Description : This gene encodes one of three GA-binding protein transcription factor subunits which functions as a DNA-binding subunit. Since this subunit shares identity with a subunit encoding the nuclear respiratory factor 2 gene, it is likely involved in activation of cytochrome oxidase expression and nuclear control of mitochondrial function. This subunit also shares identity with a subunit constituting the transcription factor E4TF1, responsible for expression of the adenovirus E4 gene. Because of its chromosomal localization and ability to form heterodimers with other polypeptides, this gene may play a role in the Down Syndrome phenotype. Two transcript variants encoding the same protein have been found for this gene. [provided by RefSeq, Oct 2010]

Classification  

Super Class Helix-turn-helix domains
Class Tryptophan cluster factors
Family Ets-related factors
Sub Family Ets-like factors

External references

Ensembl ENSG00000154727
RefSeq NP_001184226
Uniprot Q06546
Aliases E4TF1-60, E4TF1A, NFT2, NRF2, NRF2A, RCH04A07
UCSC Gene coordinates chr21:25734946-25772459

External Links

JASPAR MA0062.2
Wikipedia GABPA
WikiGenes GABPA
Transcription Factor Encylopedia GABPA    
GeneCards GABPA
FactorBook GABPA


Genomic visualization & Analyses for MACS

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for MACS

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

MACS - Datasets retained for GABPA

MACS - Datasets excluded for GABPA

Genomic visualization & Analyses for JAMM

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for JAMM

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

JAMM - Datasets retained for GABPA