ReMap 2018 v1.2

An integrative ChIP-seq analysis of regulatory regions

HOXA9

Function : homeobox A9
Description : In vertebrates, the genes encoding the class of transcription factors called homeobox genes are found in clusters named A, B, C, and D on four separate chromosomes. Expression of these proteins is spatially and temporally regulated during embryonic development. This gene is part of the A cluster on chromosome 7 and encodes a DNA-binding transcription factor which may regulate gene expression, morphogenesis, and differentiation. This gene is highly similar to the abdominal-B (Abd-B) gene of Drosophila. A specific translocation event which causes a fusion between this gene and the NUP98 gene has been associated with myeloid leukemogenesis. Read-through transcription exists between this gene and the upstream homeobox A10 (HOXA10) gene.[provided by RefSeq, Mar 2011]

Classification  

Super Class Helix-turn-helix domains
Class Homeo domain factors
Family HOX-related factors
Sub Family HOX9-13

External references

Ensembl ENSG00000078399
RefSeq NP_689952
Uniprot P31269
Aliases ABD-B, HOX1, HOX1.7, HOX1G
UCSC Gene coordinates chr7:27162437-27165529

External Links

JASPAR MA0594.1
Wikipedia HOXA9
WikiGenes HOXA9
Transcription Factor Encylopedia HOXA9    
GeneCards HOXA9
FactorBook HOXA9


Genomic visualization & Analyses for MACS

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for MACS

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

MACS - Datasets retained for HOXA9

Genomic visualization & Analyses for JAMM

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for JAMM

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

JAMM - Datasets retained for HOXA9