ReMap 2018 v1.2

An integrative ChIP-seq analysis of regulatory regions

HOXC11

Function : homeobox C11
Description : This gene belongs to the homeobox family of genes. The homeobox genes encode a highly conserved family of transcription factors that play an important role in morphogenesis in all multicellular organisms. Mammals possess four similar homeobox gene clusters, HOXA, HOXB, HOXC and HOXD, which are located on different chromosomes and consist of 9 to 11 genes arranged in tandem. This gene is one of several homeobox HOXC genes located in a cluster on chromosome 12. The product of this gene binds to a promoter element of the lactase-phlorizin hydrolase. It also may play a role in early intestinal development. An alternatively spliced variant encoding a shorter isoform has been described but its full-length nature has not been determined. [provided by RefSeq, Jul 2008]

Classification  

Super Class Helix-turn-helix domains
Class Homeo domain factors
Family HOX-related factors
Sub Family HOX9-13

External references

Ensembl ENSG00000123388
RefSeq NP_055027
Uniprot O43248
Aliases HOX3H
UCSC Gene coordinates chr12:53973125-53976418

External Links

JASPAR MA0651.1
Wikipedia HOXC11
WikiGenes HOXC11
Transcription Factor Encylopedia HOXC11    
GeneCards HOXC11
FactorBook HOXC11


Genomic visualization & Analyses for MACS

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for MACS

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

MACS - Datasets retained for HOXC11

Genomic visualization & Analyses for JAMM

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for JAMM

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

JAMM - Datasets retained for HOXC11