ReMap 2018 v1.2

An integrative ChIP-seq analysis of regulatory regions

KDM1A

Function : lysine demethylase 1A
Description : This gene encodes a nuclear protein containing a SWIRM domain, a FAD-binding motif, and an amine oxidase domain. This protein is a component of several histone deacetylase complexes, though it silences genes by functioning as a histone demethylase. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Apr 2009]

Classification  

Super Class Unknown
Class Unknown
Family Unknown
Sub Family Unknown

External references

Ensembl ENSG00000004487
RefSeq NP_055828
Uniprot O60341
Aliases AOF2, BHC110, CPRF, KDM1, LSD1
UCSC Gene coordinates chr1:23019442-23083690

External Links

JASPAR KDM1A
Wikipedia KDM1A
WikiGenes KDM1A
Transcription Factor Encylopedia KDM1A    
GeneCards KDM1A
FactorBook KDM1A


Genomic visualization & Analyses for MACS

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for MACS

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

MACS - Datasets retained for KDM1A

MACS - Datasets excluded for KDM1A

Genomic visualization & Analyses for JAMM

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for JAMM

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

JAMM - Datasets retained for KDM1A