ReMap 2018 v1.2

An integrative ChIP-seq analysis of regulatory regions

KDM4A

Function : lysine demethylase 4A
Description : This gene is a member of the Jumonji domain 2 (JMJD2) family and encodes a protein containing a JmjN domain, a JmjC domain, a JD2H domain, two TUDOR domains, and two PHD-type zinc fingers. This nuclear protein functions as a trimethylation-specific demethylase, converting specific trimethylated histone residues to the dimethylated form, and as a transcriptional repressor. [provided by RefSeq, Apr 2009]

Classification  

Super Class Unknown
Class Unknown
Family Unknown
Sub Family Unknown

External references

Ensembl ENSG00000066135
RefSeq NP_055478
Uniprot O75164
Aliases JHDM3A, JMJD2, JMJD2A, TDRD14A
UCSC Gene coordinates chr1:43650117-43705517

External Links

JASPAR KDM4A
Wikipedia KDM4A
WikiGenes KDM4A
Transcription Factor Encylopedia KDM4A    
GeneCards KDM4A
FactorBook KDM4A


Genomic visualization & Analyses for MACS

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for MACS

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

MACS - Datasets retained for KDM4A

Genomic visualization & Analyses for JAMM

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for JAMM

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

JAMM - Datasets retained for KDM4A