ReMap 2018 v1.2

An integrative ChIP-seq analysis of regulatory regions

KDM5A

Function : lysine demethylase 5A
Description : This gene encodes a member of the Jumonji, AT-rich interactive domain 1 (JARID1) histone demethylase protein family. The encoded protein plays a role in gene regulation through the histone code by specifically demethylating lysine 4 of histone H3. The encoded protein interacts with many other proteins, including retinoblastoma protein, and is implicated in the transcriptional regulation of Hox genes and cytokines. This gene may play a role in tumor progression. [provided by RefSeq, Aug 2013]

Classification  

Super Class Helix-turn-helix domains
Class ARID domain factors
Family ARID-related factors
Sub Family JARID1

External references

Ensembl ENSG00000073614
RefSeq NP_001036068
Uniprot P29375
Aliases RBBP-2, RBBP2, RBP2
UCSC Gene coordinates chr12:280056-389454

External Links

JASPAR KDM5A
Wikipedia KDM5A
WikiGenes KDM5A
Transcription Factor Encylopedia KDM5A    
GeneCards KDM5A
FactorBook KDM5A


Genomic visualization & Analyses for MACS

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for MACS

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

MACS - Datasets retained for KDM5A

Genomic visualization & Analyses for JAMM

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for JAMM

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

JAMM - Datasets retained for KDM5A