ReMap 2018 v1.2

An integrative ChIP-seq analysis of regulatory regions

MYOD1

Function : myogenic differentiation 1
Description : This gene encodes a nuclear protein that belongs to the basic helix-loop-helix family of transcription factors and the myogenic factors subfamily. It regulates muscle cell differentiation by inducing cell cycle arrest, a prerequisite for myogenic initiation. The protein is also involved in muscle regeneration. It activates its own transcription which may stabilize commitment to myogenesis. [provided by RefSeq, Jul 2008]

Classification  

Super Class Basic domains
Class Basic helix-loop-helix factors (bHLH)
Family MyoD / ASC-related factors
Sub Family Myogenic transcription factors

External references

Ensembl ENSG00000129152
RefSeq NP_002469
Uniprot P15172
Aliases MYF3, MYOD, PUM, bHLHc1
UCSC Gene coordinates chr11:17719562-17722130

External Links

JASPAR MA0499.1
Wikipedia MYOD1
WikiGenes MYOD1
Transcription Factor Encylopedia MYOD1    
GeneCards MYOD1
FactorBook MYOD1


Genomic visualization & Analyses for MACS

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for MACS

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

MACS - Datasets retained for MYOD1

Genomic visualization & Analyses for JAMM

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for JAMM

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

JAMM - Datasets retained for MYOD1