ReMap 2018 v1.2

An integrative ChIP-seq analysis of regulatory regions

NCOR1

Function : nuclear receptor corepressor 1
Description : This gene encodes a protein that mediates ligand-independent transcription repression of thyroid-hormone and retinoic-acid receptors by promoting chromatin condensation and preventing access of the transcription machinery. It is part of a complex which also includes histone deacetylases and transcriptional regulators similar to the yeast protein Sin3p. This gene is located between the Charcot-Marie-Tooth and Smith-Magenis syndrome critical regions on chromosome 17. Alternate splicing results in multiple transcript variants. Pseudogenes of this gene are found on chromosomes 17 and 20.[provided by RefSeq, Jun 2010]

Classification  

Super Class Helix-turn-helix domains
Class Tryptophan cluster factors
Family Myb/SANT domain factors
Sub Family NCoR-like factors

External references

Ensembl ENSG00000141027
RefSeq NP_006302
Uniprot O75376
Aliases N-CoR, N-CoR1, PPP1R109, TRAC1, hN-CoR
UCSC Gene coordinates chr17:16030093-16216745

External Links

JASPAR NCOR1
Wikipedia NCOR1
WikiGenes NCOR1
Transcription Factor Encylopedia NCOR1    
GeneCards NCOR1
FactorBook NCOR1


Genomic visualization & Analyses for MACS

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for MACS

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

MACS - Datasets retained for NCOR1

Genomic visualization & Analyses for JAMM

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for JAMM

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

JAMM - Datasets retained for NCOR1