ReMap 2018 v1.2

An integrative ChIP-seq analysis of regulatory regions

NKX2-2

Function : homeobox protein Nkx-2.2
Description : NKX2-2 : The protein encoded by this gene contains a homeobox domain and may be involved in the morphogenesis of the central nervous system. This gene is found on chromosome 20 near NKX2-4, and these two genes appear to be duplicated on chromosome 14 in the form of TITF1 and NKX2-8. The encoded protein is likely to be a nuclear transcription factor. [provided by RefSeq, Jul 2008]

Classification  

Super Class Helix-turn-helix domains
Class Homeo domain factors
Family NK-related factors
Sub Family NK-2.2

External references

Ensembl ENSG00000125820
RefSeq NP_002500.1
Uniprot O95096
Aliases NKX2.2,NKX2B
UCSC Gene coordinates

External Links

JASPAR NKX2-2
Wikipedia NKX2-2
WikiGenes NKX2-2
Transcription Factor Encylopedia NKX2-2
GeneCards NKX2-2
FactorBook NKX2-2


Genomic visualization & Analyses for MACS

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for MACS

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

MACS - Datasets retained for NKX2-2

Genomic visualization & Analyses for JAMM

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for JAMM

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

JAMM - Datasets retained for NKX2-2