ReMap 2018 v1.2

An integrative ChIP-seq analysis of regulatory regions

NKX3-1

Function : NK3 homeobox 1
Description : This gene encodes a homeobox-containing transcription factor. This transcription factor functions as a negative regulator of epithelial cell growth in prostate tissue. Aberrant expression of this gene is associated with prostate tumor progression. Alternate splicing results in multiple transcript variants of this gene. [provided by RefSeq, Jan 2012]

Classification  

Super Class Helix-turn-helix domains
Class Homeo domain factors
Family NK-related factors
Sub Family NK-3

External references

Ensembl ENSG00000167034
RefSeq NP_001243268
Uniprot Q99801
Aliases BAPX2, NKX3, NKX3.1, NKX3A
UCSC Gene coordinates chr8:23678693-23682937

External Links

JASPAR MA0124.2
Wikipedia NKX3-1
WikiGenes NKX3-1
Transcription Factor Encylopedia NKX3-1
GeneCards NKX3-1
FactorBook NKX3-1


Genomic visualization & Analyses for MACS

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for MACS

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

MACS - Datasets retained for NKX3-1

Genomic visualization & Analyses for JAMM

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for JAMM

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

JAMM - Datasets retained for NKX3-1