ReMap 2018 v1.2

An integrative ChIP-seq analysis of regulatory regions

PBX2

Function : PBX homeobox 2
Description : This gene encodes a ubiquitously expressed member of the TALE/PBX homeobox family. It was identified by its similarity to a homeobox gene which is involved in t(1;19) translocation in acute pre-B-cell leukemias. This protein is a transcriptional activator which binds to the TLX1 promoter. The gene is located within the major histocompatibility complex (MHC) on chromosome 6. [provided by RefSeq, Jul 2008]

Classification  

Super Class Helix-turn-helix domains
Class Homeo domain factors
Family TALE-type homeo domain factors
Sub Family PBX

External references

Ensembl ENSG00000237344
RefSeq NP_002577
Uniprot P40425
Aliases G17, HOX12, PBX2MHC
UCSC Gene coordinates chr6:32184732-32190185

External Links

JASPAR MA1113.1
Wikipedia PBX2
WikiGenes PBX2
Transcription Factor Encylopedia PBX2    
GeneCards PBX2
FactorBook PBX2


Genomic visualization & Analyses for MACS

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for MACS

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

MACS - Datasets retained for PBX2

Genomic visualization & Analyses for JAMM

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for JAMM

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

JAMM - Datasets retained for PBX2