ReMap 2018 v1.2

An integrative ChIP-seq analysis of regulatory regions

PRDM1

Function : PR/SET domain 1
Description : This gene encodes a protein that acts as a repressor of beta-interferon gene expression. The protein binds specifically to the PRDI (positive regulatory domain I element) of the beta-IFN gene promoter. Transcription of this gene increases upon virus induction. Two alternatively spliced transcript variants that encode different isoforms have been reported. [provided by RefSeq, Jul 2008]

Classification  

Super Class Zinc-coordinating DNA-binding domains
Class C2H2 zinc finger factors
Family More than 3 adjacent zinc finger factors
Sub Family PRDM1-like factors

External references

Ensembl ENSG00000057657
RefSeq NP_001189
Uniprot O75626
Aliases BLIMP1, PRDI-BF1
UCSC Gene coordinates chr6:106046728-106109938

External Links

JASPAR MA0508.2
Wikipedia PRDM1
WikiGenes PRDM1
Transcription Factor Encylopedia PRDM1    
GeneCards PRDM1
FactorBook PRDM1


Genomic visualization & Analyses for MACS

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for MACS

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

MACS - Datasets retained for PRDM1

Genomic visualization & Analyses for JAMM

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for JAMM

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

JAMM - Datasets retained for PRDM1