ReMap 2018 v1.2

An integrative ChIP-seq analysis of regulatory regions

PROX1

Function : prospero homeobox 1
Description : The protein encoded by this gene is a member of the homeobox transcription factor family. Members of this family contain a homeobox domain that consists of a 60-amino acid helix-turn-helix structure that binds DNA and RNA. The protein encoded by this gene is conserved across vertebrates and may play an essential role during development. Altered levels of this protein have been reported in cancers of different organs, such as colon, brain, blood, breast, pancreas, liver and esophagus. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2012]

Classification  

Super Class Helix-turn-helix domains
Class Homeo domain factors
Family HD-PROS factors
Sub Family None

External references

Ensembl ENSG00000117707
RefSeq NP_001257545
Uniprot Q92786
Aliases -
UCSC Gene coordinates chr1:213983238-214041509

External Links

JASPAR MA0794.1
Wikipedia PROX1
WikiGenes PROX1
Transcription Factor Encylopedia PROX1
GeneCards PROX1
FactorBook PROX1


Genomic visualization & Analyses for MACS

Datasets
quality 		DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for MACS

All peaks BED file
Merged peaks
(non-redundant peaks)		 BED file
Peak sequences FASTA file

MACS - Datasets retained for PROX1

Genomic visualization & Analyses for JAMM

Datasets
quality 		DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for JAMM

All peaks BED file
Merged peaks
(non-redundant peaks)		 BED file
Peak sequences FASTA file

JAMM - Datasets retained for PROX1