ReMap 2018 v1.2

An integrative ChIP-seq analysis of regulatory regions

RARA

Function : retinoic acid receptor alpha
Description : This gene represents a nuclear retinoic acid receptor. The encoded protein, retinoic acid receptor alpha, regulates transcription in a ligand-dependent manner. This gene has been implicated in regulation of development, differentiation, apoptosis, granulopoeisis, and transcription of clock genes. Translocations between this locus and several other loci have been associated with acute promyelocytic leukemia. Alternatively spliced transcript variants have been found for this locus.[provided by RefSeq, Sep 2010]

Classification  

Super Class Zinc-coordinating DNA-binding domains
Class Nuclear receptors with C4 zinc fingers
Family Thyroid hormone receptor-related factors (NR1)
Sub Family Retinoic acid receptors (NR1B)

External references

Ensembl ENSG00000131759
RefSeq NP_000955
Uniprot P10276
Aliases NR1B1, RAR
UCSC Gene coordinates chr17:40309170-40357642

External Links

JASPAR MA0159.1 MA0730.1
Wikipedia RARA
WikiGenes RARA
Transcription Factor Encylopedia RARA
GeneCards RARA
FactorBook RARA


Genomic visualization & Analyses for MACS

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for MACS

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

MACS - Datasets retained for RARA

MACS - Datasets excluded for RARA

Genomic visualization & Analyses for JAMM

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for JAMM

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

JAMM - Datasets retained for RARA