ReMap 2018 v1.2

An integrative ChIP-seq analysis of regulatory regions

RBPJ

Function : recombination signal binding protein for immunoglobulin kappa J region
Description : The protein encoded by this gene is a transcriptional regulator important in the Notch signaling pathway. The encoded protein acts as a repressor when not bound to Notch proteins and an activator when bound to Notch proteins. It is thought to function by recruiting chromatin remodeling complexes containing histone deacetylase or histone acetylase proteins to Notch signaling pathway genes. Several transcript variants encoding different isoforms have been found for this gene, and several pseudogenes of this gene exist on chromosome 9. [provided by RefSeq, Oct 2013]

Classification  

Super Class Immunoglobulin fold
Class Rel homology region (RHR) factors
Family CSL-related factors
Sub Family M

External references

Ensembl ENSG00000168214
RefSeq NP_976028
Uniprot Q06330
Aliases AOS3, CBF1, IGKJRB, IGKJRB1, KBF2, RBP-J, RBPJK, RBPSUH, SUH, csl
UCSC Gene coordinates chr4:26163488-26435130

External Links

JASPAR MA1116.1
Wikipedia RBPJ
WikiGenes RBPJ
Transcription Factor Encylopedia RBPJ    
GeneCards RBPJ
FactorBook RBPJ


Genomic visualization & Analyses for MACS

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for MACS

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

MACS - Datasets retained for RBPJ

Genomic visualization & Analyses for JAMM

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for JAMM

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

JAMM - Datasets retained for RBPJ