ReMap 2018 v1.2

An integrative ChIP-seq analysis of regulatory regions

RUNX1

Function : runt related transcription factor 1
Description : Core binding factor (CBF) is a heterodimeric transcription factor that binds to the core element of many enhancers and promoters. The protein encoded by this gene represents the alpha subunit of CBF and is thought to be involved in the development of normal hematopoiesis. Chromosomal translocations involving this gene are well-documented and have been associated with several types of leukemia. Three transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]

Classification  

Super Class Immunoglobulin fold
Class Runt domain factors
Family Runt-related factors
Sub Family None

External references

Ensembl ENSG00000159216
RefSeq NP_001001890
Uniprot Q01196
Aliases AML1, AML1-EVI-1, AMLCR1, CBF2alpha, CBFA2, EVI-1, PEBP2aB, PEBP2alpha
UCSC Gene coordinates chr21:34787800-35049333

External Links

JASPAR MA0002.2
Wikipedia RUNX1
WikiGenes RUNX1
Transcription Factor Encylopedia RUNX1    
GeneCards RUNX1
FactorBook RUNX1


Genomic visualization & Analyses for MACS

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for MACS

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

MACS - Datasets retained for RUNX1

MACS - Datasets excluded for RUNX1

Genomic visualization & Analyses for JAMM

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for JAMM

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

JAMM - Datasets retained for RUNX1