ReMap 2018 v1.2

An integrative ChIP-seq analysis of regulatory regions

SETDB1

Function : SET domain bifurcated 1
Description : This gene encodes a histone methyltransferase which regulates histone methylation, gene silencing, and transcriptional repression. This gene has been identified as a target for treatment in Huntington Disease, given that gene silencing and transcription dysfunction likely play a role in the disease pathogenesis. Alternatively spliced transcript variants of this gene have been described.[provided by RefSeq, Jun 2011]

Classification  

Super Class Unknown
Class Unknown
Family Unknown
Sub Family Unknown

External references

Ensembl ENSG00000143379
RefSeq NP_036564
Uniprot Q15047
Aliases ESET, H3-K9-HMTase4, KG1T, KMT1E, TDRD21
UCSC Gene coordinates chr1:150926245-150964743

External Links

JASPAR SETDB1
Wikipedia SETDB1
WikiGenes SETDB1
Transcription Factor Encylopedia SETDB1    
GeneCards SETDB1
FactorBook SETDB1


Genomic visualization & Analyses for MACS

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for MACS

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

MACS - Datasets retained for SETDB1

Genomic visualization & Analyses for JAMM

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for JAMM

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

JAMM - Datasets retained for SETDB1