ReMap 2018 v1.2

An integrative ChIP-seq analysis of regulatory regions

SIX5

Function : SIX homeobox 5
Description : The protein encoded by this gene is a homeodomain-containing transcription factor that appears to function in the regulation of organogenesis. This gene is located downstream of the dystrophia myotonica-protein kinase gene. Mutations in this gene are a cause of branchiootorenal syndrome type 2. [provided by RefSeq, Jul 2009]

Classification  

Super Class Helix-turn-helix domains
Class Homeo domain factors
Family HD-SINE factors
Sub Family SIX4-like factors

External references

Ensembl ENSG00000177045
RefSeq NP_787071
Uniprot Q8N196
Aliases BOR2, DMAHP
UCSC Gene coordinates chr19:45764784-45769238

External Links

JASPAR SIX5
Wikipedia SIX5
WikiGenes SIX5
Transcription Factor Encylopedia SIX5    
GeneCards SIX5
FactorBook SIX5


Genomic visualization & Analyses for MACS

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for MACS

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

MACS - Datasets retained for SIX5

Genomic visualization & Analyses for JAMM

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for JAMM

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

JAMM - Datasets retained for SIX5