ReMap 2018 v1.2

An integrative ChIP-seq analysis of regulatory regions

SMAD5

Function : SMAD family member 5
Description : The protein encoded by this gene is involved in the transforming growth factor beta signaling pathway that results in an inhibition of the proliferation of hematopoietic progenitor cells. The encoded protein is activated by bone morphogenetic proteins type 1 receptor kinase, and may be involved in cancer. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Feb 2014]

Classification  

Super Class beta-Hairpin exposed by an alpha/beta-scaffold
Class SMAD/NF-1 DNA-binding domain factors
Family SMAD factors
Sub Family Regulatory Smads (R-Smad)

External references

Ensembl ENSG00000113658
RefSeq NP_001001419
Uniprot Q99717
Aliases DWFC, JV5-1, MADH5
UCSC Gene coordinates chr5:136132844-136182733

External Links

JASPAR SMAD5
Wikipedia SMAD5
WikiGenes SMAD5
Transcription Factor Encylopedia SMAD5    
GeneCards SMAD5
FactorBook SMAD5


Genomic visualization & Analyses for MACS

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for MACS

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

MACS - Datasets retained for SMAD5

Genomic visualization & Analyses for JAMM

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for JAMM

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

JAMM - Datasets retained for SMAD5