ReMap 2018 v1.2

An integrative ChIP-seq analysis of regulatory regions

SMARCC2

Function : SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2
Description : The protein encoded by this gene is a member of the SWI/SNF family of proteins, whose members display helicase and ATPase activities and which are thought to regulate transcription of certain genes by altering the chromatin structure around those genes. The encoded protein is part of the large ATP-dependent chromatin remodeling complex SNF/SWI and contains a predicted leucine zipper motif typical of many transcription factors. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]

Classification  

Super Class Helix-turn-helix domains
Class Tryptophan cluster factors
Family Myb/SANT domain factors
Sub Family TADA2-like factors

External references

Ensembl ENSG00000139613
RefSeq NP_001123892
Uniprot Q8TAQ2
Aliases BAF170, CRACC2, Rsc8
UCSC Gene coordinates chr12:56161851-56189566

External Links

JASPAR SMARCC2
Wikipedia SMARCC2
WikiGenes SMARCC2
Transcription Factor Encylopedia SMARCC2    
GeneCards SMARCC2
FactorBook SMARCC2


Genomic visualization & Analyses for MACS

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for MACS

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

MACS - Datasets retained for SMARCC2

Genomic visualization & Analyses for JAMM

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for JAMM

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

JAMM - Datasets retained for SMARCC2