ReMap 2018 v1.2

An integrative ChIP-seq analysis of regulatory regions

SOX10

Function : SRY-box 10
Description : This gene encodes a member of the SOX (SRY-related HMG-box) family of transcription factors involved in the regulation of embryonic development and in the determination of the cell fate. The encoded protein may act as a transcriptional activator after forming a protein complex with other proteins. This protein acts as a nucleocytoplasmic shuttle protein and is important for neural crest and peripheral nervous system development. Mutations in this gene are associated with Waardenburg-Shah and Waardenburg-Hirschsprung disease. [provided by RefSeq, Jul 2008]

Classification  

Super Class Other all-alpha-helical DNA-binding domains
Class High-mobility group (HMG) domain factors
Family SOX-related factors
Sub Family Group E

External references

Ensembl ENSG00000100146
RefSeq NP_008872
Uniprot P56693
Aliases DOM, PCWH, WS2E, WS4, WS4C
UCSC Gene coordinates chr22:37972311-37984531

External Links

JASPAR MA0442.2
Wikipedia SOX10
WikiGenes SOX10
Transcription Factor Encylopedia SOX10
GeneCards SOX10
FactorBook SOX10


Genomic visualization & Analyses for MACS

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for MACS

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

MACS - Datasets retained for SOX10

Genomic visualization & Analyses for JAMM

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for JAMM

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

JAMM - Datasets retained for SOX10