ReMap 2018 v1.2

An integrative ChIP-seq analysis of regulatory regions

SOX11

Function : SRY-box 11
Description : This intronless gene encodes a member of the SOX (SRY-related HMG-box) family of transcription factors involved in the regulation of embryonic development and in the determination of the cell fate. The encoded protein may act as a transcriptional regulator after forming a protein complex with other proteins. The protein may function in the developing nervous system and play a role in tumorigenesis. [provided by RefSeq, Jul 2008]

Classification  

Super Class Other all-alpha-helical DNA-binding domains
Class High-mobility group (HMG) domain factors
Family SOX-related factors
Sub Family Group C

External references

Ensembl ENSG00000176887
RefSeq NP_003099
Uniprot P35716
Aliases MRD27
UCSC Gene coordinates chr2:5692666-5701384

External Links

JASPAR MA0869.1
Wikipedia SOX11
WikiGenes SOX11
Transcription Factor Encylopedia SOX11    
GeneCards SOX11
FactorBook SOX11


Genomic visualization & Analyses for MACS

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for MACS

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

MACS - Datasets retained for SOX11

Genomic visualization & Analyses for JAMM

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for JAMM

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

JAMM - Datasets retained for SOX11