ReMap 2018 v1.2

An integrative ChIP-seq analysis of regulatory regions

SOX13

Function : SRY-box 13
Description : This gene encodes a member of the SOX (SRY-related HMG-box) family of transcription factors involved in the regulation of embryonic development and in the determination of cell fate. The encoded protein may act as a transcriptional regulator after forming a protein complex with other proteins. It has also been determined to be a type-1 diabetes autoantigen, also known as islet cell antibody 12. [provided by RefSeq, Jul 2008]

Classification  

Super Class Other all-alpha-helical DNA-binding domains
Class High-mobility group (HMG) domain factors
Family SOX-related factors
Sub Family Group D

External references

Ensembl ENSG00000143842
RefSeq NP_005677
Uniprot Q9UN79
Aliases ICA12, Sox-13
UCSC Gene coordinates chr1:204073095-204127742

External Links

JASPAR MA1120.1
Wikipedia SOX13
WikiGenes SOX13
Transcription Factor Encylopedia SOX13    
GeneCards SOX13
FactorBook SOX13


Genomic visualization & Analyses for MACS

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for MACS

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

MACS - Datasets retained for SOX13

Genomic visualization & Analyses for JAMM

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for JAMM

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

JAMM - Datasets retained for SOX13