ReMap 2018 v1.2

An integrative ChIP-seq analysis of regulatory regions

SOX9

Function : SRY-box 9
Description : The protein encoded by this gene recognizes the sequence CCTTGAG along with other members of the HMG-box class DNA-binding proteins. It acts during chondrocyte differentiation and, with steroidogenic factor 1, regulates transcription of the anti-Muellerian hormone (AMH) gene. Deficiencies lead to the skeletal malformation syndrome campomelic dysplasia, frequently with sex reversal. [provided by RefSeq, Jul 2008]

Classification  

Super Class Other all-alpha-helical DNA-binding domains
Class High-mobility group (HMG) domain factors
Family SOX-related factors
Sub Family Group E

External references

Ensembl ENSG00000125398
RefSeq NP_000337
Uniprot P48436
Aliases CMD1, CMPD1, SRA1, SRXX2, SRXY10
UCSC Gene coordinates chr17:72121019-72126419

External Links

JASPAR MA0077.1
Wikipedia SOX9
WikiGenes SOX9
Transcription Factor Encylopedia SOX9
GeneCards SOX9
FactorBook SOX9


Genomic visualization & Analyses for MACS

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for MACS

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

MACS - Datasets retained for SOX9

Genomic visualization & Analyses for JAMM

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for JAMM

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

JAMM - Datasets retained for SOX9