ReMap 2018 v1.2

An integrative ChIP-seq analysis of regulatory regions

SP4

Function : Sp4 transcription factor
Description : The protein encoded by this gene is a transcription factor that can bind to the GC promoter region of a variety of genes, including those of the photoreceptor signal transduction system. The encoded protein binds to the same sites in promoter CpG islands as does the transcription factor SP1, although its expression is much more restricted compared to that of SP1. This gene may be involved in bipolar disorder and schizophrenia. [provided by RefSeq, May 2016]

Classification  

Super Class Zinc-coordinating DNA-binding domains
Class C2H2 zinc finger factors
Family Three-zinc finger Krüppel-related factors
Sub Family Sp1-like factors

External references

Ensembl ENSG00000105866
RefSeq NP_001313471
Uniprot Q02446
Aliases HF1B, SPR-1
UCSC Gene coordinates chr7:21428070-21514760

External Links

JASPAR MA0685.1
Wikipedia SP4
WikiGenes SP4
Transcription Factor Encylopedia SP4    
GeneCards SP4
FactorBook SP4


Genomic visualization & Analyses for MACS

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for MACS

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

MACS - Datasets retained for SP4

Genomic visualization & Analyses for JAMM

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for JAMM

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

JAMM - Datasets retained for SP4