ReMap 2018 v1.2

An integrative ChIP-seq analysis of regulatory regions

SPIB

Function : Spi-B transcription factor
Description : The protein encoded by this gene is a transcriptional activator that binds to the PU-box (5'-GAGGAA-3') and acts as a lymphoid-specific enhancer. Four transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Sep 2011]

Classification  

Super Class Helix-turn-helix domains
Class Tryptophan cluster factors
Family Ets-related factors
Sub Family Spi-like factors

External references

Ensembl ENSG00000269404
RefSeq NP_001230929
Uniprot Q01892
Aliases SPI-B
UCSC Gene coordinates chr19:50418937-50431052

External Links

JASPAR MA0081.1
Wikipedia SPIB
WikiGenes SPIB
Transcription Factor Encylopedia SPIB
GeneCards SPIB
FactorBook SPIB


Genomic visualization & Analyses for MACS

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for MACS

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

MACS - Datasets retained for SPIB

MACS - Datasets excluded for SPIB

Genomic visualization & Analyses for JAMM

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for JAMM

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

JAMM - Datasets retained for SPIB