ReMap 2018 v1.2

An integrative ChIP-seq analysis of regulatory regions

T

Function : T brachyury transcription factor
Description : The protein encoded by this gene is an embryonic nuclear transcription factor that binds to a specific DNA element, the palindromic T-site. It binds through a region in its N-terminus, called the T-box, and effects transcription of genes required for mesoderm formation and differentiation. The protein is localized to notochord-derived cells. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2012]

Classification  

Super Class Immunoglobulin fold
Class T-Box factors
Family Brachyury-related factors
Sub Family None

External references

Ensembl ENSG00000164458
RefSeq NP_003172
Uniprot O15178
Aliases SAVA, TFT
UCSC Gene coordinates chr6:166157643-166168668

External Links

JASPAR MA0009.2
Wikipedia T
WikiGenes T
Transcription Factor Encylopedia T
GeneCards T
FactorBook T


Genomic visualization & Analyses for MACS

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for MACS

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

MACS - Datasets retained for T

Genomic visualization & Analyses for JAMM

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for JAMM

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

JAMM - Datasets retained for T